Evidence map›Paper›PMID 28423626›Full record

ArticleOncotarget2017

Prognostic value of loss of heterozygosity and sub-cellular localization of SMAD4 varies with tumor stage in colorectal cancer.

Xu Jia, Chandrakumar Shanmugam, Ravi K Paluri, Nirag C Jhala, Michael P Behring, Venkat R Katkoori, Shajan P Sugandha, Sejong Bae, Temesgen Samuel, Upender Manne

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Association ofGenetics research · 2022
    Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Mutational Status ofCancers · 2022
    Article
  9. Article
  10. The Role of Testin in Human Cancers.Pathology oncology research : POR · 2019
    Review
  11. Article
  12. Frontiers in oncology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Xu JiaDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Chandrakumar ShanmugamDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Ravi K PaluriDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Nirag C JhalaDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Michael P BehringDepartment of Epidemiology, University of Alabama at Birmingham, Birmingham, AL, USA.
Venkat R KatkooriDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Shajan P SugandhaDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Sejong BaeDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, USA.
Temesgen SamuelCollege of Veterinary Medicine, Tuskegee University, Tuskegee, AL, USA.
Upender ManneDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
University of Alabama at Birmingham · USESIC Hospital · INTuskegee University · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
TRAINING AND CAREER DEVELOPMENTU54CA118948 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Timiya S Nolan · 2005 to 2026
$26.6M
Prognostic Molecular Markers of Colorectal CancerR01CA098932 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MANNE, UPENDER · 2003 to 2009
$1.5M
NCI NIH HHS P30 CA013148NCI NIH HHS R01 CA098932NCI NIH HHS U54 CA118948
6 · The paper itself

Abstract

backgroundAlthough loss of heterozygosity (LOH) at chromosome location 18q21 and decreased expression of SMAD4 in invasive colorectal cancers (CRCs) correlate with poor patient survival, the prognostic value of LOH at 18q21 and sub-cellular localization of SMAD4 have not been evaluated in relation to tumor stage.

methodsGenomic DNA samples from 209 formalin-fixed, paraffin-embedded sporadic CRC tissues and their matching controls were analyzed for 18q21 LOH, and corresponding tissue sections were evaluated by immunohistochemistry for expression of SMAD4 and assessed for its sub-cellular localization (nuclear vs. cytoplasmic). In addition, 53 frozen CRCs and their matching control tissues were analyzed for their mutational status and mRNA expression of SMAD4. The phenotypic expression pattern and LOH status were evaluated for correlation with patient survival by the use of Kaplan-Meier and Cox regression models.

resultsLOH of 18q21 was detected in 61% of the informative cases. In 8% of the cases, missense point mutations were detected in Smad4. In CRCs, relative to controls, there was increased SMAD4 staining in the cytoplasm (74%) and decreased staining in the nuclei (37%). LOH of 18q21 and high cytoplasmic localization of SMAD4 were associated with shortened overall survival of Stage II patients, whereas low nuclear expression of SMAD4 was associated with worse survival, but only for patients with Stage III CRCs.

conclusionsLOH of 18q21 and high cytoplasmic localization of SMAD4 in Stage II CRCs and low nuclear SMAD4 in Stage III CRCs are predictors of shortened patient survival.

Indexed as

Loss of HeterozygosityAgedBiomarkers, TumorCell NucleusChromosomes, Human, Pair 18Colorectal NeoplasmsCytoplasmDNA, NeoplasmFemaleFollow-Up StudiesHumansMaleMutationNeoplasm GradingNeoplasm StagingPrognosisBiomarkers, TumorDNA, NeoplasmSmad4 ProteinSMAD4 protein, human18q21 LOHcolorectal cancernuclear/cytoplasmic SMAD4survivaltumor stage

Identifiers

PMID28423626
PMCPMC5386755
OpenAlexW2591015059

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.