Evidence map›Paper›PMID 28422238›Full record

ArticleNanoscale2017

3D single-molecule tracking enables direct hybridization kinetics measurement in solution.

Cong Liu, Judy M Obliosca, Yen-Liang Liu, Yu-An Chen, Ning Jiang, Hsin-Chih Yeh

Abstract read
In one paragraph

Article in Nanoscale, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Recent Advances in Single-Molecule Tracking and Imaging Techniques.Annual review of analytical chemistry (Palo Alto, Calif.) · 2023
    Review
  3. Real-Time Feedback-Driven Single-Particle Tracking: A Survey and Perspective.Small (Weinheim an der Bergstrasse, Germany) · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Real-time 3D single molecule tracking.Nature communications · 2020
    Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cong LiuDepartment of Biomedical Engineering, Cockrell School of Engineering, University of Texas at Austin, Austin, Texas 78712, USA. tim.yeh@austin.utexas.edu.
Judy M Obliosca
Yen-Liang Liu
Yu-An Chen
Ning Jiang
Hsin-Chih Yeh

Funding

Genomic Approaches to the T Cell Receptor Repertoire during AgingR00AG040149 · NIA · UNIVERSITY OF TEXAS AT AUSTIN · PI JIANG, NING JENNY · 2013 to 2015
$740k
An integrated imaging tool for probing EGFR subcellular trafficking in real timeR21CA193038 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI DUNN, ANDREW K, YEH, HSIN-CHIH · 2015 to 2017
$625k
Genomic Approaches to the T Cell Receptor Repertoire during AgingK99AG040149 · NIA · UNIVERSITY OF TEXAS AT AUSTIN · PI JIANG, NING JENNY · 2011 to 2012
$266k
NCI NIH HHS R21 CA193038NIA NIH HHS K99 AG040149NIA NIH HHS R00 AG040149
6 · The paper itself

Abstract

Single-molecule measurements of DNA hybridization kinetics are mostly performed on a surface or inside a trap. Here we demonstrate a time-resolved, 3D single-molecule tracking (3D-SMT) method that allows us to follow a freely diffusing ssDNA molecule in solution for hundreds of milliseconds or even seconds and observe multiple annealing and melting events taking place on the same molecule. This is achieved by combining confocal-feedback 3D-SMT with time-domain fluorescence lifetime measurement, where fluorescence lifetime serves as the indicator of hybridization. With sub-diffraction-limit spatial resolution in molecular tracking and 15 ms temporal resolution in monitoring the change of reporter's lifetime, we have demonstrated a full characterization of annealing rate (k

Indexed as

Nucleic Acid HybridizationDiffusionDNA, Single-StrandedKineticsNanotechnologyDNA, Single-Stranded

Identifiers

PMID28422238
PMCPMC5515391

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.