Evidence map›Paper›PMID 28421330›Full record

ArticlePlanta2017

Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.

Yuri Takeda, Taichi Koshiba, Yuki Tobimatsu, Shiro Suzuki, Shinya Murakami, Masaomi Yamamura, Md Mahabubur Rahman, Toshiyuki Takano, Takefumi Hattori, Masahiro Sakamoto and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. GM crops & food · 2024
    Article
  6. Article
  7. Metabolic engineering ofPlant biotechnology (Tokyo, Japan) · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Lignin, the Lignification Process, and Advanced, Lignin-Based Materials.International journal of molecular sciences · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Frontiers in plant science · 2022
    Article
  20. Frontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yuri TakedaResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Taichi KoshibaResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Yuki TobimatsuResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Shiro SuzukiResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Shinya MurakamiResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Masaomi YamamuraResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Md Mahabubur RahmanResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Toshiyuki TakanoGraduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.
Takefumi HattoriResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Masahiro SakamotoGraduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.
Toshiaki UmezawaResearch Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan. tumezawa@rish.kyoto-u.ac.jp.
Kyoto University · JPNational Institute of Technology Okinawa College · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionRegulation of a gene encoding coniferaldehyde 5-hydroxylase leads to substantial alterations in lignin structure in rice cell walls, identifying a promising genetic engineering target for improving grass biomass utilization. The aromatic composition of lignin greatly affects utilization characteristics of lignocellulosic biomass and, therefore, has been one of the primary targets of cell wall engineering studies. Limited information is, however, available regarding lignin modifications in monocotyledonous grasses, despite the fact that grass lignocelluloses have a great potential for feedstocks of biofuel production and various biorefinery applications. Here, we report that manipulation of a gene encoding coniferaldehyde 5-hydroxylase (CAld5H, or ferulate 5-hydroxylase, F5H) leads to substantial alterations in syringyl (S)/guaiacyl (G) lignin aromatic composition in rice (Oryza sativa), a major model grass and commercially important crop. Among three CAld5H genes identified in rice, OsCAld5H1 (CYP84A5) appeared to be predominantly expressed in lignin-producing rice vegetative tissues. Down-regulation of OsCAld5H1 produced altered lignins largely enriched in G units, whereas up-regulation of OsCAld5H1 resulted in lignins enriched in S units, as revealed by a series of wet-chemical and NMR structural analyses. Our data collectively demonstrate that OsCAld5H1 expression is a major factor controlling S/G lignin composition in rice cell walls. Given that S/G lignin composition affects various biomass properties, we contemplate that manipulation of CAld5H gene expression represents a promising strategy to upgrade grass biomass for biorefinery applications.

Indexed as

AcroleinBiofuelsBiomassBiosynthetic PathwaysCarboxy-LyasesCell WallDown-RegulationGenetic EngineeringLigninOryzaPhylogenyPlant LeavesPlant ProteinsPlants, Genetically ModifiedUp-RegulationAcroleinBiofuelsCarboxy-Lyasesconiferaldehydeguaiacyl monolignolLigninlignocellulosephenylacrylic acid decarboxylasePlant Proteinssyringyl monolignolConiferaldehyde 5-hydroxylaseFerulate 5-hydroxylaseGrassLigninOryza sativaS/G ratio

Identifiers

PMID28421330
OpenAlexW2605513553

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.