Evidence map›Paper›PMID 28420730›Full record

ArticleThe Journal of biological chemistry2017

Structure and characterization of a class 3B proline utilization A: Ligand-induced dimerization and importance of the C-terminal domain for catalysis.

David A Korasick, Thameesha T Gamage, Shelbi Christgen, Kyle M Stiers, Lesa J Beamer, Michael T Henzl, Donald F Becker, John J Tanner

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Structural Biology of Proline Catabolic Enzymes.Antioxidants & redox signaling · 2019
    Review
  10. Role of Proline in Pathogen and Host Interactions.Antioxidants & redox signaling · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Structure, function, and mechanism of proline utilization A (PutA).Archives of biochemistry and biophysics · 2017
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David A KorasickFrom the Departments of Biochemistry and.
Thameesha T GamageChemistry, University of Missouri, Columbia, Missouri 65211, and.
Shelbi ChristgenDepartment of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588.
Kyle M StiersFrom the Departments of Biochemistry and.
Lesa J BeamerFrom the Departments of Biochemistry and.
Michael T HenzlFrom the Departments of Biochemistry and.
Donald F BeckerDepartment of Biochemistry and Redox Biology Center, University of Nebraska, Lincoln, Nebraska 68588.
John J TannerFrom the Departments of Biochemistry and tannerjj@missouri.edu.

Funding

Substrate Channeling and Communication in Proline Metabolic EnzymesR01GM065546 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI Donald F Becker, JOHN J TANNER · 2002 to 2026
$5.0M
Redox Biology CenterP30GM103335 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2012 to 2016
$4.3M
MOLECULAR BASIS OF GENE EXPRESSION AND SIGNAL PROCESSINGT32GM008396 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI HANNINK, MARK · 1991 to 2021
$4.1M
Spectroelectrochemistry of the Novel PutA FlavoproteinR01GM061068 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2001 to 2015
$3.7M
Molecular Mechanisms of DiseaseT32GM107001 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F, BLACK, PAUL N. · 2015 to 2019
$1.0M
NIGMS NIH HHS P30 GM103335NIGMS NIH HHS R01 GM061068NIGMS NIH HHS R01 GM065546NIGMS NIH HHS T32 GM008396NIGMS NIH HHS T32 GM107001
6 · The paper itself

Abstract

The bifunctional flavoenzyme proline utilization A (PutA) catalyzes the two-step oxidation of proline to glutamate using separate proline dehydrogenase (PRODH) and l-glutamate-γ-semialdehyde dehydrogenase active sites. Because PutAs catalyze sequential reactions, they are good systems for studying how metabolic enzymes communicate via substrate channeling. Although mechanistically similar, PutAs vary widely in domain architecture, oligomeric state, and quaternary structure, and these variations represent different structural solutions to the problem of sequestering a reactive metabolite. Here, we studied PutA from

Indexed as

Protein MultimerizationBacterial ProteinsCatalysisCorynebacteriumCrystallography, X-RayGlutamic AcidMembrane ProteinsNADOxidation-ReductionProlineProtein DomainsStructure-Activity RelationshipBacterial ProteinsGlutamic AcidMembrane ProteinsNADProlinePutA protein, Bacteriaanalytical ultracentrifugationbifunctional enzymedehydrogenaseenzyme kineticsflavoproteinoligomerizationsubstrate channelingX-ray crystallography

Identifiers

PMID28420730
PMCPMC5465489

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.