Evidence map›Paper›PMID 28420428›Full record

ArticleParasites & vectors2017

Significant heterogeneity in Wolbachia copy number within and between populations of Onchocerca volvulus.

Samuel Armoo, Stephen R Doyle, Mike Y Osei-Atweneboana, Warwick N Grant

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Molecular Detection and Phylogenetic Analysis of EndosymbiontJournal of arthropod-borne diseases · 2019
    Article
  5. Review
  6. Frontiers in genetics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

Samuel ArmooDepartment of Animal, Plant and Soil Sciences, School of Life Sciences, La Trobe University, Bundoora, 3083, VIC, Australia.
Stephen R DoyleDepartment of Animal, Plant and Soil Sciences, School of Life Sciences, La Trobe University, Bundoora, 3083, VIC, Australia.
Mike Y Osei-AtweneboanaEnvironmental Biology and Health Division, Council for Scientific and Industrial Research, Water Research Institute, Accra, Ghana.
Warwick N GrantDepartment of Animal, Plant and Soil Sciences, School of Life Sciences, La Trobe University, Bundoora, 3083, VIC, Australia. W.Grant@latrobe.edu.au.
Council for Scientific and Industrial Research · GHLa Trobe University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWolbachia are intracellular bacteria found in arthropods and several filarial nematode species. The filarial Wolbachia have been proposed to be involved in the immunopathology associated with onchocerciasis. Higher Wolbachia-to-nematode ratios have been reported in the savannah-ecotype compared to the forest-ecotype, and have been interpreted as consistent with a correlation between Wolbachia density and disease severity. However, factors such as geographic stratification and ivermectin drug exposure can lead to significant genetic heterogeneity in the nematode host populations, so we investigated whether Wolbachia copy number variation is also associated with these underlying factors.

methodsGenomic DNA was prepared from single adult nematodes representing forest and savannah ecotypes sampled from Togo, Ghana, Côte d'Ivoire and Mali. A qPCR assay was developed to measure the number of Wolbachia genome(s) per nematode genome. Next-generation sequencing (NGS) was also used to measure relative Wolbachia copy number, and independently verify the qPCR assay.

resultsSignificant variation was observed within the forest (range: 0.02 to 452.99; median: 10.58) and savannah (range: 0.01 to 1106.25; median: 9.10) ecotypes, however, no significant difference between ecotypes (P = 0.645) was observed; rather, strongly significant Wolbachia variation was observed within and between the nine study communities analysed (P = 0.021), independent of ecotype. Analysis of ivermectin-treated and untreated nematodes by qPCR showed no correlation (P = 0.869); however, an additional analysis of a subset of the nematodes by qPCR and NGS revealed a correlation between response to ivermectin treatment and Wolbachia copy number (P = 0.020).

conclusionsThis study demonstrates that extensive within and between population variation exists in the Wolbachia content of individual adult O. volvulus. The origin and functional significance of such variation (up to ~ 100,000-fold between worms; ~10 to 100-fold between communities) in the context of the proposed mutualistic relationship between the worms and the bacteria, and between the presence of Wolbachia and clinical outcome of infection, remains unclear. These data do not support a correlation between Wolbachia copy number and forest or savannah ecotype, and may have implications for the development of anti-Wolbachia drugs as a macrofilaricidal treatment of onchocerciasis. The biological significance of a correlation between variation in Wolbachia copy number and ivermectin response remains unexplained.

Indexed as

DNA Copy Number VariationsGenetic HeterogeneityGenome, BacterialAnimalsEcotypeForestsGenome, HelminthGrasslandHigh-Throughput Nucleotide SequencingIvermectinOnchocerca volvulusReal-Time Polymerase Chain ReactionWolbachiaIvermectinCopy numberHeterogeneityNext-generation sequencingOnchocerca volvulusOnchocerciasisQuantitative real-time PCRWolbachia

Identifiers

PMID28420428
PMCPMC5395808
OpenAlexW2606446319

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.