Evidence map›Paper›PMID 28420201›Full record

ArticleGenes2017

A Transcriptomic Comparison of Two Bambara Groundnut Landraces under Dehydration Stress.

Faraz Khan, Hui Hui Chai, Ishan Ajmera, Charlie Hodgman, Sean Mayes, Chungui Lu

Abstract read
In one paragraph

Article in Genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Transcriptomic analysis ofFrontiers in plant science · 2024
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Faraz KhanSchool of Biosciences, University of Nottingham, Sutton Bonington Campus, Nottingham LE12 5RD, UK. stxfk5@nottingham.ac.uk.
Hui Hui ChaiCrops for the Future, Jalan Broga, 43500 Semenyih, Selangor Darul Ehsan, Malaysia. huihui.chai@nottingham.edu.my.
Ishan AjmeraCentre for Plant Integrative Biology, University of Nottingham, Sutton Bonington Campus, Nottingham LE12 5RD, UK. bhzia@exmail.nottingham.ac.uk.
Charlie HodgmanCentre for Plant Integrative Biology, University of Nottingham, Sutton Bonington Campus, Nottingham LE12 5RD, UK. charlie.hodgman@nottingham.ac.uk.
Sean MayesSchool of Biosciences, University of Nottingham, Sutton Bonington Campus, Nottingham LE12 5RD, UK. sbzsm4@exmail.nottingham.ac.uk.
Chungui LuSchool of Animal Rural and Environmental Sciences, Nottingham Trent University, Clifton Campus, Nottingham NG11 8NS, UK. chungui.lu@ntu.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to grow crops under low-water conditions is a significant advantage in relation to global food security. Bambara groundnut is an underutilised crop grown by subsistence farmers in Africa and is known to survive in regions of water deficit. This study focuses on the analysis of the transcriptomic changes in two bambara groundnut landraces in response to dehydration stress. A cross-species hybridisation approach based on the Soybean Affymetrix GeneChip array has been employed. The differential gene expression analysis of a water-limited treatment, however, showed that the two landraces responded with almost completely different sets of genes. Hence, both landraces with very similar genotypes (as assessed by the hybridisation of genomic DNA onto the Soybean Affymetrix GeneChip) showed contrasting transcriptional behaviour in response to dehydration stress. In addition, both genotypes showed a high expression of dehydration-associated genes, even under water-sufficient conditions. Several gene regulators were identified as potentially important. Some are already known, such as

Indexed as

Bambara groundnutcross-species microarray analysisdehydration stresslandraces

Identifiers

PMID28420201
PMCPMC5406868

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.