Evidence map›Paper›PMID 28419748›Full record

ArticleMicrobiologyOpen2017

The 'known' genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils.

Ian D E A Lidbury, Tandra Fraser, Andrew R J Murphy, David J Scanlan, Gary D Bending, Alexandra M E Jones, Jonathan D Moore, Andrew Goodall, Mark Tibbett, John P Hammond and 1 more

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 69 citations in OpenAlex.

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  10. Frontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Ian D E A LidburySchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.ORCID 0000-0001-7190-315X
Tandra FraserSchool of Agriculture, Policy, and Development, University of Reading, Whiteknights, United Kingdom.
Andrew R J MurphySchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.
David J ScanlanSchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.
Gary D BendingSchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.
Alexandra M E JonesSchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.
Jonathan D MooreThe Genome Analysis Centre, Norwich Research Park, Norwich, United Kingdom.ORCID 0000-0002-5486-0407
Andrew GoodallSchool of Agriculture, Policy, and Development, University of Reading, Whiteknights, United Kingdom.
Mark TibbettSchool of Agriculture, Policy, and Development, University of Reading, Whiteknights, United Kingdom.
John P HammondSchool of Agriculture, Policy, and Development, University of Reading, Whiteknights, United Kingdom.ORCID 0000-0002-6241-3551
Elizabeth M H WellingtonSchool of Life Sciences, University of Warwick, Coventry, West Midlands, United Kingdom.
University of Warwick · GBUniversity of Reading · GBNorwich Research Park · GBSouthern Cross University · AU

Funding

Biotechnology and Biological Sciences Research Council BB/L026074/1
6 · The paper itself

Abstract

In soil, bioavailable inorganic orthophosphate is found at low concentrations and thus limits biological growth. To overcome this phosphorus scarcity, plants and bacteria secrete numerous enzymes, namely acid and alkaline phosphatases, which cleave orthophosphate from various organic phosphorus substrates. Using profile hidden Markov modeling approaches, we investigated the abundance of various non specific phosphatases, both acid and alkaline, in metagenomes retrieved from soils with contrasting pH regimes. This analysis uncovered a marked reduction in the abundance and diversity of various alkaline phosphatases in low-pH soils that was not counterbalanced by an increase in acid phosphatases. Furthermore, it was also discovered that only half of the bacterial strains from different phyla deposited in the Integrated Microbial Genomes database harbor alkaline phosphatases. Taken together, our data suggests that these 'phosphatase lacking' isolates likely increase in low-pH soils and future research should ascertain how these bacteria overcome phosphorus scarcity.

Indexed as

MicrobiotaSoil MicrobiologyGenetic VariationHydrogen-Ion ConcentrationMetagenomeOrganic ChemicalsPhosphoric Monoester HydrolasesPhosphorusSoilOrganic ChemicalsPhosphoric Monoester HydrolasesPhosphorusSoilAcid phosphatasealkaline phosphatasemetagenomicsmicrobial communitymicrobial diversitysoil

Identifiers

PMID28419748
PMCPMC5552915
OpenAlexW2606331563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.