Evidence map›Paper›PMID 28419251›Full record

ArticleCarcinogenesis2017

Evaluating genetic variants associated with breast cancer risk in high and moderate-penetrance genes in Asians.

Mi-Ryung Han, Wei Zheng, Qiuyin Cai, Yu-Tang Gao, Ying Zheng, Manjeet K Bolla, Kyriaki Michailidou, Joe Dennis, Qin Wang, Alison M Dunning and 20 more

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  13. Article
  14. Genomic Profiling Comparison of GermlineFrontiers in oncology · 2020
    Article
  15. Article
  16. The influence of anPharmacogenomics and personalized medicine · 2019
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 15 institutions in 10 countries.

Mi-Ryung HanDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203,USA.
Wei ZhengDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203,USA.
Qiuyin CaiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203,USA.
Yu-Tang GaoDepartment of Epidemiology, Shanghai Cancer Institute, Shanghai200032, China.
Ying ZhengShanghai Municipal Center for Disease Control and Prevention, Shanghai 200336, China.
Manjeet K BollaCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Kyriaki MichailidouCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Joe DennisCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Qin WangCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Alison M DunningCentre for Cancer Genetic Epidemiology, Department of Oncology, University of Cambridge, Cambridge CB1 8RN, UK.
Paul BrennanInternational Agency for Research on Cancer, 69372 Lyon CEDEX 08, France.
Shou-Tung ChenDepartment of Surgery, Changhua Christian Hospital,Changhua City 50006,Taiwan.
Ji-Yeob ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Korea.
Mikael HartmanSaw Swee Hock School of Public Health, National University of Singapore, Singapore 117549, Singapore.
Hidemi ItoDivision of Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.
Artitaya LophatananonDivision of Health Sciences, Warwick Medical School, Warwick University, Coventry CV4 7AL, UK.
Keitaro MatsuoDivision of Molecular Medicine, Aichi Cancer CenterResearch Institute, Nagoya 464-8681, Japan.
Hui MiaoSaw Swee Hock School of Public Health, National University of Singapore, Singapore 117549, Singapore.
Kenneth MuirDivision of Health Sciences, Warwick Medical School, Warwick University, Coventry CV4 7AL, UK.
Suleeporn SangrajrangNational Cancer Institute,Bangkok 10400, Thailand.
Chen-Yang ShenTaiwan Biobank, Institute of Biomedical Sciences, Academia Sinica, Taipei 11529, Taiwan.
Soo Hwang TeoCancer Research Initiatives Foundation, Subang Jaya, Selangor 47500, Malaysia.
Chiu-Chen TsengDepartment of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90032, USA.
Anna H WuDepartment of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles CA 90032, USA.
Cheng Har YipBreast Cancer Research Unit, Cancer Research Institute, University Malaya Medical Centre, Kuala Lumpur 59100, Malaysia and.
Daehee KangDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Korea.
Yong-Bing XiangDepartment of Epidemiology, Shanghai Cancer Institute, Shanghai200032, China.
Douglas F EastonCentre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care, University of Cambridge, Cambridge CB1 8RN, UK.
Xiao-Ou ShuDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203,USA.
Jirong LongDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN 37203,USA.
University of Cambridge · GBVanderbilt University · USAichi Cancer Center · JPNational University of Singapore · SGSeoul National University · KRShanghai Cancer Institute · CNUniversity of Southern California · USUniversity of Warwick · GBCancer Research Malaysia · MYCentre International de Recherche sur le Cancer · FRChanghua Christian Hospital · TWInstitute of Biomedical Sciences, Academia Sinica · TWNational Cancer Institute of Thailand · THShanghai Municipal Center For Disease Control Prevention · CNUniversity Malaya Medical Centre · MY

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Epidemiologic StudiesU19CA148065 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI AHSAN, HABIBUL, BRUGGE, JOAN SIEFERT · 2010 to 2014
$10.6M
Shanghai Womens Health StudyUM1CA182910 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2014 to 2018
$5.9M
Shanghai Breast Cancer StudyR01CA064277 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 1996 to 2012
$4.8M
Cancer Risk Reduction and Diet: A Cohort Study of WomenR37CA070867 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2009 to 2013
$4.7M
Consortium Study to Identify Breast Cancer Susceptibility LociR01CA148667 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LONG, JIRONG, ZHENG, WEI · 2011 to 2015
$3.3M
SURVEILLANCE EPIDEMIOLOGY AND END RESULTSN01CN025403 · CN · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ROSS, RONALD K · 1992 to 1996
–
NCI NIH HHS N01 CN025403NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA064277NCI NIH HHS R01 CA148667NCI NIH HHS R37 CA070867NCI NIH HHS U19 CA148065NCI NIH HHS UM1 CA182910Wellcome Trust 203477/Z/16/ZWorld Health Organization 001
6 · The paper itself

Abstract

Over the past 20 years, high-penetrance pathogenic mutations in genes BRCA1, BRCA2, TP53, PTEN, STK11 and CDH1 and moderate-penetrance mutations in genes CHEK2, ATM, BRIP1, PALB2, RAD51C, RAD50 and NBN have been identified for breast cancer. In this study, we investigated whether there are additional variants in these 13 genes associated with breast cancer among women of Asian ancestry. We analyzed up to 654 single nucleotide polymorphisms (SNPs) from 6269 cases and 6624 controls of Asian descent included in the Breast Cancer Association Consortium (BCAC), and up to 236 SNPs from 5794 cases and 5529 controls included in the Shanghai Breast Cancer Genetics Study (SBCGS). We found three missense variants with minor allele frequency (MAF) <0.05: rs80358978 (Gly2508Ser), rs80359065 (Lys2729Asn) and rs11571653 (Met784Val) in the BRCA2 gene, showing statistically significant associations with breast cancer risk, with P-values of 1.2 × 10-4, 1.0 × 10-3 and 5.0 × 10-3, respectively. In addition, we found four low-frequency variants (rs8176085, rs799923, rs8176173 and rs8176258) in the BRCA1 gene, one common variant in the CHEK2 gene (rs9620817), and one common variant in the PALB2 gene (rs13330119) associated with breast cancer risk at P < 0.01. Our study identified several new risk variants in BRCA1, BRCA2, CHEK2, and PALB2 genes in relation to breast cancer risk in Asian women. These results provide further insights that, in addition to the high/moderate penetrance mutations, other low-penetrance variants in these genes may also contribute to breast cancer risk.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationPenetranceAllelesAsian PeopleBreast NeoplasmsChromosome MappingDatabases, GeneticFemaleGene FrequencyGenetic Association StudiesHumansPolymorphism, Single NucleotidePopulation SurveillanceRisk

Identifiers

PMID28419251
PMCPMC5963497
OpenAlexW2606599182

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.