Evidence map›Paper›PMID 28418192›Full record

ArticleZoonoses and public health2018

Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam.

A Berto, P H Anh, J J Carrique-Mas, P Simmonds, N Van Cuong, N T Tue, N Van Dung, M E Woolhouse, I Smith, G A Marsh and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Zoonoses and public health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 42 citations in OpenAlex.

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  15. Coronavirus 2019 Infectious Disease Epidemic: Where We Are, What Can Be Done and Hope For.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 4 countries.

A BertoWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.ORCID 0000-0003-4005-9464
P H AnhWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.ORCID 0000-0001-9668-9233
J J Carrique-MasWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
P SimmondsNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
N Van CuongWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
N T TueWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
N Van DungNuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
M E WoolhouseCentre for Immunity, Infection & Evolution, The University of Edinburgh, Edinburgh, UK.
I SmithHealth and Biosecurity, CSIRO, Australian Animal Health Laboratory, Geelong, Vic., Australia.
G A MarshHealth and Biosecurity, CSIRO, Australian Animal Health Laboratory, Geelong, Vic., Australia.
J E BryantWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
G E ThwaitesWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
S BakerWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
M A RabaaWellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.ORCID 0000-0003-0529-2228
VIZIONS consortium
Angkor Hospital for Children · KHOxford University Clinical Research Unit · VNCommonwealth Scientific and Industrial Research Organisation · AUNuffield Orthopaedic Centre · GBCentre for Immunity, Infection and Evolution · GB

Funding

Wellcome Trust 100087/Z/12/ZWellcome Trust 110085/Z/15/ZWellcome Trust WT/093724
6 · The paper itself

Abstract

Bats and rodents are being increasingly recognized as reservoirs of emerging zoonotic viruses. Various studies have investigated bat viruses in tropical regions, but to date there are no data regarding viruses with zoonotic potential that circulate in bat and rat populations in Viet Nam. To address this paucity of data, we sampled three bat farms and three wet markets trading in rat meat in the Mekong Delta region of southern Viet Nam. Faecal and urine samples were screened for the presence of RNA from paramyxoviruses, coronaviruses and filoviruses. Paramyxovirus RNA was detected in 4 of 248 (1%) and 11 of 222 (4.9%) bat faecal and urine samples, respectively. Coronavirus RNA was detected in 55 of 248 (22%) of bat faecal samples; filovirus RNA was not detected in any of the bat samples. Further, coronavirus RNA was detected in 12 of 270 (4.4%) of rat faecal samples; all samples tested negative for paramyxovirus. Phylogenetic analysis revealed that the bat paramyxoviruses and bat and rat coronaviruses were related to viruses circulating in bat and rodent populations globally, but showed no cross-species mixing of viruses between bat and rat populations within Viet Nam. Our study shows that potentially novel variants of paramyxoviruses and coronaviruses commonly circulate in bat and rat populations in Viet Nam. Further characterization of the viruses and additional human and animal surveillance is required to evaluate the likelihood of viral spillover and to assess whether these viruses pose a risk to human health.

Indexed as

AnimalsChiropteraCoronavirusFecesFiloviridaeHumansParamyxoviridaePhylogenyRatsRNA, ViralUrineVietnamRNA, ViralbatscoronavirusparamyxovirusratsViet Namzoonotic viruses

Identifiers

PMID28418192
PMCPMC5811810
OpenAlexW2605481587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.