Evidence map›Paper›PMID 28417959›Full record

ArticleScientific reports2017

Genome sequence of Plasmopara viticola and insight into the pathogenic mechanism.

Ling Yin, Yunhe An, Junjie Qu, Xinlong Li, Yali Zhang, Ian Dry, Huijuan Wu, Jiang Lu

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
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  9. Review
  10. Article
  11. Article
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  13. Functional analysis of the Nep1-like proteins fromPlant signaling & behavior · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Frontiers in microbiology · 2022
    Review
  18. Plant signaling & behavior · 2021
    Article
  19. Article
  20. Characterization ofFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ling YinCollege of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.
Yunhe AnCollege of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.
Junjie QuGuangxi Crop Genetic Improvement and Biotechnology Laboratory, Guangxi Academy of Agricultural Sciences, Nanning 530007, China.
Xinlong LiCollege of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.
Yali ZhangCollege of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.
Ian DryCSIRO Agriculture &Food, Wine Innovation West Building, Hartley Grove, Urrbrae, SA 5064, Australia.
Huijuan WuBeijing Center for Physical and Chemical Analysis, Beijing 100089, China.
Jiang LuCollege of Food Science and Nutritional Engineering, China Agricultural University, Beijing 100083, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plasmopara viticola causes downy mildew disease of grapevine which is one of the most devastating diseases of viticulture worldwide. Here we report a 101.3 Mb whole genome sequence of P. viticola isolate 'JL-7-2' obtained by a combination of Illumina and PacBio sequencing technologies. The P. viticola genome contains 17,014 putative protein-coding genes and has ~26% repetitive sequences. A total of 1,301 putative secreted proteins, including 100 putative RXLR effectors and 90 CRN effectors were identified in this genome. In the secretome, 261 potential pathogenicity genes and 95 carbohydrate-active enzymes were predicted. Transcriptional analysis revealed that most of the RXLR effectors, pathogenicity genes and carbohydrate-active enzymes were significantly up-regulated during infection. Comparative genomic analysis revealed that P. viticola evolved independently from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis. The availability of the P. viticola genome provides a valuable resource not only for comparative genomic analysis and evolutionary studies among oomycetes, but also enhance our knowledge on the mechanism of interactions between this biotrophic pathogen and its host.

Indexed as

Evolution, MolecularGenomeHost-Pathogen InteractionsPlant DiseasesArabidopsisOomycetesVitis

Identifiers

PMID28417959
PMCPMC5394536

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.