Evidence map›Paper›PMID 28417461›Full record

ArticleFEBS letters2017

The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger.

Ebru Alazi, Claire Khosravi, Tim G Homan, Saskia du Pré, Mark Arentshorst, Marcos Di Falco, Thi T M Pham, Mao Peng, Maria Victoria Aguilar-Pontes, Jaap Visser and 3 more

Open access · hybridAbstract readLetter
In one paragraph

Article in FEBS letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

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  6. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  7. The Sugar Metabolic Model ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Article
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  11. Comparative Characterization ofFrontiers in bioengineering and biotechnology · 2020
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  12. Article
  13. Review
  14. The gold-standard genome ofStudies in mycology · 2018
    Article
  15. Article
  16. Review
  17. A community-driven reconstruction of theFungal biology and biotechnology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Ebru AlaziMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Claire KhosraviFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht University, The Netherlands.
Tim G HomanMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Saskia du PréMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Mark ArentshorstMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Marcos Di FalcoCentre for Structural and Functional Genomics, Concordia University, Montreal, Canada.
Thi T M PhamCentre for Structural and Functional Genomics, Concordia University, Montreal, Canada.
Mao PengFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht University, The Netherlands.
Maria Victoria Aguilar-PontesFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht University, The Netherlands.
Jaap VisserMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Adrian TsangCentre for Structural and Functional Genomics, Concordia University, Montreal, Canada.
Ronald P de VriesFungal Physiology, Westerdijk Fungal Biodiversity Institute, Utrecht University, The Netherlands.
Arthur F J RamMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Leiden University · NLWesterdijk Fungal Biodiversity Institute · NLConcordia University · USUtrecht University · NLConcordia University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Aspergillus niger, the enzymes encoded by gaaA, gaaB, and gaaC catabolize d-galacturonic acid (GA) consecutively into l-galactonate, 2-keto-3-deoxy-l-galactonate, pyruvate, and l-glyceraldehyde, while GaaD converts l-glyceraldehyde to glycerol. Deletion of gaaB or gaaC results in severely impaired growth on GA and accumulation of l-galactonate and 2-keto-3-deoxy-l-galactonate, respectively. Expression levels of GA-responsive genes are specifically elevated in the ∆gaaC mutant on GA as compared to the reference strain and other GA catabolic pathway deletion mutants. This indicates that 2-keto-3-deoxy-l-galactonate is the inducer of genes required for GA utilization.

Indexed as

Aspergillus nigerFungal ProteinsGene Expression Regulation, EnzymologicMetabolic Networks and PathwaysMutationSugar AcidsFungal Proteinsgalactonic acidSugar Acidsd-galacturonic acid catabolismgene regulationpectinase

Identifiers

PMID28417461
PMCPMC5488244
OpenAlexW2607191494

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.