Evidence map›Paper›PMID 28416970›Full record

ArticleClinical epigenetics2017

DNA methylation profiling in peripheral lung tissues of smokers and patients with COPD.

Isaac K Sundar, Qiangzong Yin, Brian S Baier, Li Yan, Witold Mazur, Dongmei Li, Martha Susiarjo, Irfan Rahman

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 103 citations in OpenAlex.

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  17. Journal of clinical medicine · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Isaac K SundarDepartment of Environmental Medicine, University of Rochester Medical Center, Box 850, 601 Elmwood Avenue, Rochester, 14642 NY USA.
Qiangzong YinDepartment of Environmental Medicine, University of Rochester Medical Center, Box 850, 601 Elmwood Avenue, Rochester, 14642 NY USA.
Brian S BaierDepartment of Environmental Medicine, University of Rochester Medical Center, Box 850, 601 Elmwood Avenue, Rochester, 14642 NY USA.
Li YanDepartment of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY USA.
Witold MazurHeart and Lung Center, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Dongmei LiDepartment of Clinical & Translational Research, University of Rochester Medical Center, Rochester, NY USA.
Martha SusiarjoDepartment of Environmental Medicine, University of Rochester Medical Center, Box 850, 601 Elmwood Avenue, Rochester, 14642 NY USA.
Irfan RahmanDepartment of Environmental Medicine, University of Rochester Medical Center, Box 850, 601 Elmwood Avenue, Rochester, 14642 NY USA.
University of Rochester Medical Center · USHelsinki University Hospital · FIRoswell Park Comprehensive Cancer Center · US

Funding

MECHANISMS OF CIGARETTE SMOKE-INDUCED LUNG CELLULAR SENESCENCER01HL085613 · NHLBI · UNIVERSITY OF ROCHESTER · PI RAHMAN, IRFAN · 2007 to 2017
$4.0M
NHLBI NIH HHS R01 HL085613
6 · The paper itself

Abstract

backgroundEpigenetics changes have been shown to be affected by cigarette smoking. Cigarette smoke (CS)-mediated DNA methylation can potentially affect several cellular and pathophysiological processes, acute exacerbations, and comorbidity in the lungs of patients with chronic obstructive pulmonary disease (COPD). We sought to determine whether genome-wide lung DNA methylation profiles of smokers and patients with COPD were significantly different from non-smokers. We isolated DNA from parenchymal lung tissues of patients including eight lifelong non-smokers, eight current smokers, and eight patients with COPD and analyzed the samples using Illumina's Infinium HumanMethylation450 BeadChip.

resultsOur data revealed that the differentially methylated genes were related to top canonical pathways (e.g., G beta gamma signaling, mechanisms of cancer, and nNOS signaling in neurons), disease and disorders (organismal injury and abnormalities, cancer, and respiratory disease), and molecular and cellular functions (cell death and survival, cellular assembly and organization, cellular function and maintenance) in patients with COPD. The genome-wide DNA methylation analysis identified suggestive genes, such as

conclusionsOur study suggests that DNA methylation in suggestive genes, such as

Indexed as

DNA MethylationAdaptor Proteins, Signal TransducingAgedBH3 Interacting Domain Death Agonist ProteinDNA FingerprintingFemaleHumansLungMaleMiddle AgedPulmonary Disease, Chronic ObstructiveReceptors, GABA-ASequence Analysis, DNASmokingAdaptor Proteins, Signal TransducingBH3 Interacting Domain Death Agonist ProteinBID protein, humanGABRB1 protein, humanNOS1AP protein, humanReceptors, GABA-ACOPDDNA methylationEpigeneticsLungPyrosequencingSmokers

Identifiers

PMID28416970
PMCPMC5391602
OpenAlexW2607122000

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.