Evidence map›Paper›PMID 28415781›Full record

ArticleOncotarget2017

Relevance of DNA repair gene polymorphisms to gastric cancer risk and phenotype.

Patricia Carrera-Lasfuentes, Angel Lanas, Luis Bujanda, Mark Strunk, Enrique Quintero, Santos Santolaria, Rafael Benito, Federico Sopeña, Elena Piazuelo, Concha Thomson and 15 more

Open access · diamondAbstract readMulticenter Study
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Prognostic value of comprehensive typing based on m6A and gene cluster in TNBC.Journal of cancer research and clinical oncology · 2023
    Article
  6. Polymorphism of XRCC3 in Egyptian Breast Cancer Patients.Pharmacogenomics and personalized medicine · 2020
    Article
  7. Article
  8. Review
  9. Association between the SNPs of theJournal of Cancer · 2018
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 17 institutions in 1 country.

Patricia Carrera-LasfuentesCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Angel LanasCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Luis BujandaCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Mark StrunkCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Enrique QuinteroDepartment of Gastroenterology, Hospital Universitario de Canarias, Instituto Universitario de Tecnologías Biomédicas (ITB), Centro de Investigación Biomédica de Canarias (CIBICAN), Tenerife, Spain.
Santos SantolariaDepartment of Gastroenterology, Hospital San Jorge, Huesca, Spain.
Rafael BenitoCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Federico SopeñaCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Elena PiazueloCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Concha ThomsonDepartment of Gastroenterology, Hospital Obispo Polanco, Teruel, Spain.
Angeles Pérez-AisaDepartment of Gastroenterology, Hospital del Sol, Marbella, Spain.
David Nicolás-PérezDepartment of Gastroenterology, Hospital Universitario de Canarias, Instituto Universitario de Tecnologías Biomédicas (ITB), Centro de Investigación Biomédica de Canarias (CIBICAN), Tenerife, Spain.
Elizabeth HijonaCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Jesús EspinelDepartment of Gastroenterology, Complejo Hospitalario, León, Spain.
Rafael CampoDepartment of Gastroenterology, Hospital Parc Tauli, Sabadell, Spain.
Marisa ManzanoDepartment of Gastroenterology, Hospital 12 de Octubre, Madrid, Spain.
Fernando GeijoDepartment of Gastroenterology, Hospital Clínico Universitario, Salamanca, Spain.
María PelliseCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Manuel ZaballaDepartment of Gastroenterology, Hospital de Cruces, Barakaldo, Spain.
Ferrán González-HuixDepartment of Gastroenterology, Hospital Josep Trueta, Girona, Spain.
Jorge EspinósDepartment of Gastroenterology, Mutua de Tarrasa, Spain.
Llúcia TitóDepartment of Gastroenterology, Hospital de Mataró, Mataró, Spain.
Luis BarrancoDepartment of Gastroenterology, Hospital del Mar, Barcelona, Spain.
Mauro D'AmatoBioDonostia Health Research Institute, IKERBASQUE, Basque Foundation for Science, San Sebastián, Spain.
María Asunción García-GonzálezCIBER de Enfermedades Hepáticas y Digestivas (CIBERehd), Spain.
Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas · ESHospital Clínico Universitario Lozano Blesa · ESHospital Universitario de Canarias · ESDeleted InstitutionHospital Costa del Sol · ESHospital de Cruces · ESHospital Del Mar · ESHospital de Mataró · ESHospital General San Jorge · ESHospital Obispo Polanco · ESHospital Universitari de Girona Doctor Josep Trueta · ESIkerbasque · ESInstituto Aragonés de Ciencias de la Salud · ESResearch Institute Hospital 12 de Octubre · ESUniversidad de Zaragoza · ESUniversity Hospital Mútua de Terrassa · ESUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Variations in DNA repair genes have been reported as key factors in gastric cancer (GC) susceptibility but results among studies are inconsistent. We aimed to assess the relevance of DNA repair gene polymorphisms and environmental factors to GC risk and phenotype in a Caucasian population in Spain. Genomic DNA from 603 patients with primary GC and 603 healthy controls was typed for 123 single nucleotide polymorphisms in DNA repair genes using the Illumina platform. Helicobacter pylori infection with CagA strains (odds ratio (OR): 1.99; 95% confidence interval (CI): 1.55-2.54), tobacco smoking (OR: 1.77; 95% CI: 1.22-2.57), and family history of GC (OR: 2.87; 95% CI: 1.85-4.45) were identified as independent risk factors for GC. By contrast, the TP53 rs9894946A (OR: 0.73; 95% CI: 0.56-0.96), TP53 rs1042522C (OR: 0.76; 95% CI: 0.56-0.96), and BRIP1 rs4986764T (OR: 0.55; 95% CI: 0.38-0.78) variants were associated with lower GC risk. Significant associations with specific anatomopathological GC subtypes were also observed, most notably in the ERCC4 gene with the rs1799801C, rs2238463G, and rs3136038T variants being inversely associated with cardia GC risk. Moreover, the XRCC3 rs861528 allele A was significantly increased in the patient subgroup with diffuse GC (OR: 1.75; 95% CI: 1.30-2.37). Our data show that specific TP53, BRIP1, ERCC4, and XRCC3 polymorphisms are relevant in susceptibility to GC risk and specific subtypes in Caucasians.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseasePolymorphism, GeneticAdultAgedAged, 80 and overAllelesCase-Control StudiesCombined Modality TherapyDNA RepairFemaleGene FrequencyHaplotypesHumansLinkage DisequilibriumMaleDNA repairgastric cancerHelicobacter pyloripolymorphism

Identifiers

PMID28415781
PMCPMC5482622
OpenAlexW2596456766

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.