Evidence map›Paper›PMID 28415646›Full record

ArticleOncotarget2017

Combination of immunohistochemistry, FISH and RT-PCR shows high incidence of Xp11 translocation RCC: comparison of three different diagnostic methods.

Hyun Jung Lee, Dong Hoon Shin, Gyu You Noh, Young Keum Kim, Ahrong Kim, Nari Shin, Jung Hee Lee, Kyung Un Choi, Jee Yeon Kim, Chang Hun Lee and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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  7. Use of multicolor fluorescence in situ hybridization to detect deletions in clinical tissue sections.Laboratory investigation; a journal of technical methods and pathology · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Hyun Jung LeeDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Dong Hoon ShinDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Gyu You NohDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Young Keum KimDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Ahrong KimDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Nari ShinDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Jung Hee LeeDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Kyung Un ChoiDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Jee Yeon KimDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Chang Hun LeeDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Mee Young SolDepartment of Pathology, School of Medicine, Pusan National University, Yangsan, Korea.
Seo Hee RhaDepartment of Pathology, Donga University Hospital, Busan, Korea.
Sung Woo ParkDepartment of Urology, School of Medicine, Pusan National University, Yangsan, Korea.
Pusan National University · KRDong-A University Hospital · KRPusan National University Yangsan Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We evaluated the frequency of translocation renal cell carcinoma (RCC) by reverse transcription polymerase chain reaction (RT-PCR) and how well the TFE3 immunoreactivity is concordant with TFE3 gene translocation status proved by fluorescence in situ hybridization (FISH) assay and RT-PCR. TFE3 and Cathepsin K expression was analyzed by immunohistochemistry in 185 RCC cases, and 48 cases either of more than weak expression of TFE3 or of positivity for Cathepsin K were done for FISH analysis and RT-PCR. All the RT-PCR positive cases were confirmed by cloning and sequencing. Of the 14 cases with strong nuclear TFE3 expression, 12 showed a break-apart signal by FISH. ASPL- and PRCC-TFE3 translocations were detected in 13 and one case, respectively, by RT-PCR. Of 21 cases with weak TFE3 expression, five were translocation-positive by FISH. ASPL-, PRCC-, and PSF-TFE3 translocations were detected by RT-PCR (n=3, 3, and 1, respectively). All 13 TFE3-negative/cathepsin K-positive cases were negative by FISH and two each harbored ASPL- and PRCC-TFE3 translocations that were detected by RT-PCR. A high rate of TFE3 immunoreactivity (8.6%) was confirmed by RT-PCR (13.5%) and FISH (9.7%). Higher translocation rate of RT-PCR means RT-PCR detected translocation in TFE3 weak expression group and only cathepsin K positive group more specifically than FISH. Thus, RT-PCR would complement FISH analysis for detecting translocation RCC with fusion partners.

Indexed as

Chromosomes, Human, XTranslocation, GeneticAdultAgedAged, 80 and overBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkers, TumorCarcinoma, Renal CellFemaleGene ExpressionHumansImmunohistochemistryIncidenceIn Situ Hybridization, FluorescenceKidney NeoplasmsMaleBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkers, TumorTFE3 protein, humanFFPEFISHPathology Sectionrenal cell carcinomaRT-PCRTFE3

Identifiers

PMID28415646
PMCPMC5458165
OpenAlexW2600747023

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.