Evidence map›Paper›PMID 28415562›Full record

ArticleOncotarget2017

Genome-wide association study of high-altitude pulmonary edema in a Han Chinese population.

Xun Li, Tianbo Jin, Mingxia Zhang, Hua Yang, Xuewen Huang, Xiaobo Zhou, Wenchao Huang, Lipeng Qin, Longli Kang, Ming Fan and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Xun LiCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Tianbo JinKey Laboratory of High Altitude Environment and Genes Related to Diseases of Tibet Autonomous Region, School of Medicine, Xizang Minzu University, Xianyang, Shaanxi 712082, China.
Mingxia ZhangSchool of Life Sciences, Northwest University, Xi'an, Shaanxi 710069, China.
Hua YangSchool of Life Sciences, Northwest University, Xi'an, Shaanxi 710069, China.
Xuewen HuangCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Xiaobo ZhouCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Wenchao HuangCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Lipeng QinCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Longli KangKey Laboratory of High Altitude Environment and Genes Related to Diseases of Tibet Autonomous Region, School of Medicine, Xizang Minzu University, Xianyang, Shaanxi 712082, China.
Ming FanDepartment of Brain Protection and Plasticity, Institute of Basic Medical Sciences, Beijing 100850, China.
Suzhi LiCenter of Altitude Disease, General Hospital of Tibet Military Area Command, Lhasa 850003, China.
Tibet Autonomous Region People's Hospital · CNNorthwest University · CNInstitute of Basic Medical Sciences of the Chinese Academy of Medical SciencesXizang Minzu University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A two-stage genome-wide association study (GWAS) was performed to identify and analyze genes and single nucleotide polymorphisms (SNPs) associated with high-altitude pulmonary edema (HAPE) in a Han Chinese patient population. In the first stage, DNA samples from 68 patients with recurrent HAPE were scanned using Affymetrix SNP Array 6.0 Chips, and allele frequencies were compared to those of 84 HapMap CHB samples to identify candidate SNPs. In the second stage, the 77 identified candidate SNPs were examined in an independent cohort of samples from 199 HAPE patients and 304 controls. Associations between SNPs and HAPE risk were tested using various genetic models. Of the 77 original SNPs, 7 were found to be associated with HAPE susceptibility in the second stage of the study. GO and pathway enrichment analysis of the 7 SNPs revealed 5 adjacent genes involved in various processes, including regulation of nucleoside diphosphate metabolism, thyroid hormone catabolism, and low-density lipoprotein receptor activity. These results suggest the identified SNPs and genes may contribute to the physiopathology of HAPE.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAdultAllelesAltitude SicknessAsian PeopleCase-Control StudiesChinaFemaleGene FrequencyGene OntologyHumansHypertension, PulmonaryMaleMiddle AgedOdds Ratiogenome wide association analysis (GWAS)high-altitude pulmonary edema (HAPE)single nucleotide polymorphisms (SNPs)susceptibility gene

Identifiers

PMID28415562
PMCPMC5458230
OpenAlexW2597355730

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.