Evidence map›Paper›PMID 28414809›Full record

ArticlePloS one2017

Comparative expression profiling of testis-enriched genes regulated during the development of spermatogonial cells.

Jinsoo Ahn, Yoo-Jin Park, Paula Chen, Tae Jin Lee, Young-Jun Jeon, Carlo M Croce, Yeunsu Suh, Seongsoo Hwang, Woo-Sung Kwon, Myung-Geol Pang and 3 more

Abstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A novel testis-enriched gene,Frontiers in cell and developmental biology · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jinsoo AhnDepartment of Animal Sciences, The Ohio State University, Columbus, Ohio, United States of America.
Yoo-Jin ParkCenter for Systems Biology, Program in Membrane Biology/Nephrology Division, Massachusetts General Hospital, Boston, MA and Harvard Medical School, Boston, Massachusetts, United States of America.
Paula ChenDepartment of Animal Sciences, The Ohio State University, Columbus, Ohio, United States of America.
Tae Jin LeeDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, United States of America.
Young-Jun JeonStanford Cancer Institute, Stanford University, Stanford, California, United States of America.
Carlo M CroceDepartment of Cancer Biology and Genetics, The Ohio State University, Columbus, Ohio, United States of America.
Yeunsu SuhDepartment of Animal Sciences, The Ohio State University, Columbus, Ohio, United States of America.
Seongsoo HwangAnimal Biotechnology Division, National Institute of Animal Science, RDA, Wanju-gun, Jeonbuk, Republic of Korea.
Woo-Sung KwonDepartment of Animal Biotechnology, Kyungpook National University, Sangju, Republic of Korea.
Myung-Geol PangDepartment of Animal Science and Technology, Chung-Ang University, Anseong, Gyeonggi-do, Republic of Korea.
Cheorl-Ho KimDepartment of Biological Sciences, SungKyunKwan University, Chunchun-Dong, Jangan-Gu, Suwon City, Kyunggi-Do, Republic of Korea.
Sang Suk LeeDepartment of Animal Science and Technology, Sunchon National University, Suncheon, Republic of Korea.
Kichoon LeeDepartment of Animal Sciences, The Ohio State University, Columbus, Ohio, United States of America.ORCID http://orcid.org/0000-0001-6169-7516

Funding

Cancer Gene Discovery to Identify Targetable TargetsR35CA197706 · NCI · OHIO STATE UNIVERSITY · PI CROCE, CARLO M · 2015 to 2021
$6.4M
NCI NIH HHS R35 CA197706
6 · The paper itself

Abstract

The testis has been identified as the organ in which a large number of tissue-enriched genes are present. However, a large portion of transcripts related to each stage or cell type in the testis still remains unknown. In this study, databases combined with confirmatory measurements were used to investigate testis-enriched genes, localization in the testis, developmental regulation, gene expression profiles of testicular disease, and signaling pathways. Our comparative analysis of GEO DataSets showed that 24 genes are predominantly expressed in testis. Cellular locations of 15 testis-enriched proteins in human testis have been identified and most of them were located in spermatocytes and round spermatids. Real-time PCR revealed that expressions of these 15 genes are significantly increased during testis development. Also, an analysis of GEO DataSets indicated that expressions of these 15 genes were significantly decreased in teratozoospermic patients and polyubiquitin knockout mice, suggesting their involvement in normal testis development. Pathway analysis revealed that most of those 15 genes are implicated in various sperm-related cell processes and disease conditions. This approach provides effective strategies for discovering novel testis-enriched genes and their expression patterns, paving the way for future characterization of their functions regarding infertility and providing new biomarkers for specific stages of spematogenesis.

Indexed as

AnimalsDatabases, GeneticGene Expression ProfilingGene Expression Regulation, DevelopmentalGenetic MarkersHumansMaleMiceMice, Inbred C57BLMice, KnockoutPolyubiquitinReal-Time Polymerase Chain ReactionSignal TransductionSpecies SpecificitySpermatidsSpermatocytesGenetic MarkersPolyubiquitin

Identifiers

PMID28414809
PMCPMC5393594

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.