Evidence map›Paper›PMID 28414711›Full record

ArticleNature chemical biology2017

The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes.

Paola Estrada, Miglena Manandhar, Shi-Hui Dong, Jaigeeth Deveryshetty, Vinayak Agarwal, John E Cronan, Satish K Nair

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. A ferritin-like diiron oxygenase BioE initiates bacterial biotin synthesis, a promising antivirulence target.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
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  16. Evolution ofPeerJ · 2020
    Article
  17. AFrontiers in microbiology · 2020
    Article
  18. Review
  19. Article
  20. Advances in synthesis of biotin and assembly of lipoic acid.Current opinion in chemical biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Paola EstradaDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Miglena ManandharDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Shi-Hui DongDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Jaigeeth DeveryshettyInstitute for Genomic Biology University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Vinayak AgarwalInstitute for Genomic Biology University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
John E CronanDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Satish K NairDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
University of Illinois Urbana-Champaign · US

Funding

GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR01AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1985 to 2022
$12.0M
GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR37AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1994 to 2003
$1.8M
NIAID NIH HHS R01 AI015650NIAID NIH HHS R37 AI015650
6 · The paper itself

Abstract

Reactions that activate carboxylates through acyl-adenylate intermediates are found throughout biology and include acyl- and aryl-CoA synthetases and tRNA synthetases. Here we describe the characterization of Aquifex aeolicus BioW, which represents a new protein fold within the superfamily of adenylating enzymes. Substrate-bound structures identified the enzyme active site and elucidated the mechanistic strategy for conjugating CoA to the seven-carbon α,ω-dicarboxylate pimelate, a biotin precursor. Proper position of reactive groups for the two half-reactions is achieved solely through movements of active site residues, as confirmed by site-directed mutational analysis. The ability of BioW to hydrolyze adenylates of noncognate substrates is reminiscent of pre-transfer proofreading observed in some tRNA synthetases, and we show that this activity can be abolished by mutation of a single residue. These studies illustrate how BioW can carry out three different biologically prevalent chemical reactions (adenylation, thioesterification, and proofreading) in the context of a new protein fold.

Indexed as

Models, MolecularAdenosine MonophosphateCatalytic DomainCoenzyme A LigasesCrystallizationLigandsMolecular StructureSubstrate SpecificityAdenosine MonophosphateCoenzyme A LigasesLigandspimeloyl-CoA synthetase

Identifiers

PMID28414711
PMCPMC7310518
OpenAlexW2607043745

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.