Evidence map›Paper›PMID 28412069›Full record

ArticleOphthalmology2017

Whole-Exome Sequencing Identifies Biallelic IDH3A Variants as a Cause of Retinitis Pigmentosa Accompanied by Pseudocoloboma.

Laurence H M Pierrache, Adva Kimchi, Rinki Ratnapriya, Lisa Roberts, Galuh D N Astuti, Alexey Obolensky, Avigail Beryozkin, Martha J H Tjon-Fo-Sang, Jose Schuil, Caroline C W Klaver and 11 more

Open access · greenAbstract read
In one paragraph

Article in Ophthalmology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Unraveling theInternational journal of molecular sciences · 2025
    Article
  3. Pseudocoloboma-like maculopathy with biallelicJournal of medical genetics · 2023
    Article
  4. Review
  5. Review
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  7. Article
  8. Review
  9. Article
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  17. Review
  18. MouseDisease models & mechanisms · 2018
    Article
  19. A homozygous founder missense variant in arylsulfatase G abolishes its enzymatic activity causing atypical Usher syndrome in humans.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
  20. Ashkenazi Jewish genomic variants: integrating data from the Israeli National Genetic Database and gnomAD.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 10 institutions in 5 countries.

Laurence H M PierracheThe Rotterdam Eye Hospital, Rotterdam, The Netherlands; Rotterdam Ophthalmic Institute, Rotterdam, The Netherlands; Department of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands; Department of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands.
Adva KimchiDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Rinki RatnapriyaNeurobiology-Neurodegeneration & Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
Lisa RobertsUCT/MRC Human Genetics Research Unit, Division of Human Genetics, Department of Pathology, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Galuh D N AstutiDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands; Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands; Division of Human Genetics, Center for Biomedical Research, Faculty of Medicine, Diponegoro University, Semarang, Indonesia.
Alexey ObolenskyDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Avigail BeryozkinDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Martha J H Tjon-Fo-SangThe Rotterdam Eye Hospital, Rotterdam, The Netherlands.
Jose SchuilBartiméus Institute for the Visually Impaired, Zeist, The Netherlands.
Caroline C W KlaverDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands; Department of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands; Department of Ophthalmology, Radboud University Medical Center, Nijmegen, The Netherlands.
Ernie M H F BongersDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Lonneke Haer-WigmanDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Nicoline SchalijDepartment of Ophthalmology, Leiden University Medical Center, Leiden, The Netherlands.
Martijn H BreuningDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Gratia M FischerDepartment of Ophthalmology, Dr. George Mukhari Academic Hospital, Sefako Makgatho Health Sciences University (SMU), Ga-Rankuwa, Pretoria, South Africa.
Eyal BaninDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Raj S RamesarUCT/MRC Human Genetics Research Unit, Division of Human Genetics, Department of Pathology, Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Anand SwaroopNeurobiology-Neurodegeneration & Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
L Ingeborgh van den BornThe Rotterdam Eye Hospital, Rotterdam, The Netherlands; Rotterdam Ophthalmic Institute, Rotterdam, The Netherlands.
Dror SharonDepartment of Ophthalmology, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Frans P M CremersDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands; Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, The Netherlands. Electronic address: Frans.Cremers@radboudumc.nl.
Hadassah Medical Center · ILRadboud University Nijmegen · NLLeiden University Medical Center · NLNational Institutes of Health · USRotterdam Eye Hospital · NLUniversity of Cape Town · ZABartiméus · NLDiponegoro University · IDErasmus MC · NLSefako Makgatho Health Sciences University · ZA

Funding

Mechanisms, modeling and therapies of retinal and macular neurodegenerationZIAEY000546 · NEI · NATIONAL EYE INSTITUTE · PI SWAROOP, ANAND · 2015 to 2025
$36.3M
Intramural NIH HHS ZIA EY000546
6 · The paper itself

Abstract

purposeTo identify the genetic cause of and describe the phenotype in 4 families with autosomal recessive retinitis pigmentosa (arRP) that can be associated with pseudocoloboma.

designCase series.

participantsSeven patients from 4 unrelated families with arRP, among whom 3 patients had bilateral early-onset macular pseudocoloboma.

methodsWe performed homozygosity mapping and whole-exome sequencing in 5 probands and 2 unaffected family members from 4 unrelated families. Subsequently, Sanger sequencing and segregation analysis were performed in additional family members. We reviewed the medical history of individuals carrying IDH3A variants and performed additional ophthalmic examinations, including full-field electroretinography, fundus photography, fundus autofluorescence imaging, and optical coherence tomography.

main outcome measuresIDH3A variants, age at diagnosis, visual acuity, fundus appearance, visual field, and full-field electroretinography, fundus autofluorescence, and optical coherence tomography findings.

resultsWe identified 7 different variants in IDH3A in 4 unrelated families, that is, 5 missense, 1 nonsense, and 1 frameshift variant. All participants showed symptoms early in life, ranging from night blindness to decreased visual acuity, and were diagnosed between the ages of 1 and 11 years. Four participants with biallelic IDH3A variants displayed a typical arRP phenotype and 3 participants were diagnosed with arRP and pseudocoloboma of the macula.

conclusionsIDH3A variants were identified as a novel cause of typical arRP in some individuals associated with macular pseudocoloboma. We observed both phenotypes in 2 siblings carrying the same compound heterozygous variants, which could be explained by variable disease expression and warrants caution when making assertions about genotype-phenotype correlations.

Indexed as

Genetic Association StudiesMutationAdolescentAdultChildChild, PreschoolColobomaDNADNA Mutational AnalysisElectroretinographyExomeEye ProteinsFemaleGenes, RecessiveHomozygoteHumansDNAEye Proteins

Identifiers

PMID28412069
PMCPMC5868413
OpenAlexW2605425939

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.