Evidence map›Paper›PMID 28410390›Full record

ArticlePloS one2017

Accessory gene regulator (Agr) functionality in Staphylococcus aureus derived from lower respiratory tract infections.

Meissiner Gomes-Fernandes, Maisem Laabei, Natalia Pagan, Jessica Hidalgo, Sònia Molinos, Raquel Villar Hernandez, Dídac Domínguez-Villanueva, A Toby A Jenkins, Alicia Lacoma, Cristina Prat

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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  7. Nasal vestibular furunculosis: Summarised case series.World journal of otorhinolaryngology - head and neck surgery · 2022
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  12. Phenotypic characteristics of incident and chronic MRSA isolates in cystic fibrosis.Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2021
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  17. The Continuing Threat of Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2019
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  18. TheMolecules (Basel, Switzerland) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Meissiner Gomes-FernandesMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Maisem LaabeiMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Natalia PaganMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Jessica HidalgoMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Sònia MolinosMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Raquel Villar HernandezMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Dídac Domínguez-VillanuevaMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
A Toby A JenkinsDepartment of Chemistry, University of Bath, Bath, United Kingdom.
Alicia LacomaMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Cristina PratMicrobiology Department, Hospital Universitari Germans Trias i Pujol, Institut d' Investigació Germans Trias i Pujol, Universitat Autònoma de Barcelona, Badalona, Spain.
Universitat Autònoma de Barcelona · ESCentro de Investigación Biomédica en Red de Enfermedades Respiratorias · ESHospital Universitari Germans Trias i Pujol · ESUniversity of Bath · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveCharacterization of Staphylococcus aureus clinical isolates derived from lower respiratory tract infections (LRTIs), and correlation between the functionality of the accessory gene regulator (Agr) and genotypic and phenotypic characteristics, clinical variables and clinical outcome.

methodsS aureus isolates derived from LRTIs and control groups (nasal carriage and bacteraemia) were genotyped using StaphyType DNA microarray. Agr activity was evaluated using the CAMP synergistic haemolysis assay and the Vesicle Lysis Test (VLT). Discordant strains were analysed by quantitative reverse-transcriptase real-time PCR (qRT-PCR).

resultsAgr was functional in 79.7% and 84.5% of strains according to the CAMP and VLT assays respectively. Higher concordance with RNAIII expression measured by qRT-PCR was observed with the VLT assay (76.2%) compared with the CAMP assay (23.8%). No statistically significant differences were observed in Agr functionality between the study groups, nor the phenotypical/genotypical bacterial characteristics. No association between increased mortality/respiratory complications and Agr function was observed.

conclusionsAgr activity was high (82.2%) in isolates from LRTIs suggesting the importance of this global regulator in lower respiratory tract colonisation and infection. However, equally high Agr activity was observed in isolates derived from nasal carriage and bacteraemia, contradictory to previous observations. Agr functionality measured by the VLT assay was superior to CAMP assay.

Indexed as

Bacterial ProteinsDNA, BacterialGenes, RegulatorGenotypeHemolysin ProteinsHumansMethicillin-Resistant Staphylococcus aureusReal-Time Polymerase Chain ReactionRespiratory Tract InfectionsStaphylococcus aureusBacterial ProteinsDNA, BacterialHemolysin Proteins

Identifiers

PMID28410390
PMCPMC5391941
OpenAlexW2605944665

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.