Evidence map›Paper›PMID 28408760›Full record

ArticleScientific reports2017

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C.

Ruth Schmidt, Victor de Jager, Daniela Zühlke, Christian Wolff, Jörg Bernhardt, Katarina Cankar, Jules Beekwilder, Wilfred van Ijcken, Frank Sleutels, Wietse de Boer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 154 citations in OpenAlex.

  1. Review
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  15. The microbial biosynthesis of noncanonical terpenoids.Applied microbiology and biotechnology · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Natural product reports · 2023
    Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Ruth SchmidtNetherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, 6700 AB, Wageningen, The Netherlands. r.schmidt@nioo.knaw.nl.
Victor de JagerNetherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, 6700 AB, Wageningen, The Netherlands.
Daniela ZühlkeInstitute of Microbiology, University of Greifswald, 17487, Greifswald, Germany.
Christian WolffInstitute of Microbiology, University of Greifswald, 17487, Greifswald, Germany.
Jörg BernhardtInstitute of Microbiology, University of Greifswald, 17487, Greifswald, Germany.
Katarina CankarBusiness Unit Bioscience, Wageningen Plant Research, Wageningen University & Research, 6700 AA, Wageningen, The Netherlands.
Jules BeekwilderBusiness Unit Bioscience, Wageningen Plant Research, Wageningen University & Research, 6700 AA, Wageningen, The Netherlands.
Wilfred van IjckenCenter for Biomics, Erasmus Medical Center, 3015 CN, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-0421-8301
Frank SleutelsCenter for Biomics, Erasmus Medical Center, 3015 CN, Rotterdam, The Netherlands.
Wietse de BoerNetherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, 6700 AB, Wageningen, The Netherlands.
Katharina RiedelInstitute of Microbiology, University of Greifswald, 17487, Greifswald, Germany.
Paolina GarbevaNetherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, 6700 AB, Wageningen, The Netherlands. p.garbeva@nioo.knaw.nl.
Netherlands Institute of Ecology · NLUniversität Greifswald · DEErasmus MC · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of bacteria and fungi to communicate with each other is a remarkable aspect of the microbial world. It is recognized that volatile organic compounds (VOCs) act as communication signals, however the molecular responses by bacteria to fungal VOCs remain unknown. Here we perform transcriptomics and proteomics analyses of Serratia plymuthica PRI-2C exposed to VOCs emitted by the fungal pathogen Fusarium culmorum. We find that the bacterium responds to fungal VOCs with changes in gene and protein expression related to motility, signal transduction, energy metabolism, cell envelope biogenesis, and secondary metabolite production. Metabolomic analysis of the bacterium exposed to the fungal VOCs, gene cluster comparison, and heterologous co-expression of a terpene synthase and a methyltransferase revealed the production of the unusual terpene sodorifen in response to fungal VOCs. These results strongly suggest that VOCs are not only a metabolic waste but important compounds in the long-distance communication between fungi and bacteria.

Indexed as

Bacterial ProteinsBridged Bicyclo CompoundsEnergy MetabolismFungal ProteinsFusariumGene Expression ProfilingGene Expression Regulation, BacterialMetabolomeOctanesSecondary MetabolismSequence Analysis, DNASerratiaVolatile Organic Compounds1,2,4,5,6,7,8-heptamethyl-3-methylenebicyclo(3.2.1)oct-6-eneBacterial ProteinsBridged Bicyclo CompoundsFungal ProteinsOctanesVolatile Organic Compounds

Identifiers

PMID28408760
PMCPMC5429845
OpenAlexW2604569619

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.