Evidence map›Paper›PMID 28408723›Full record

ArticleScience (New York, N.Y.)2017

Nucleic acid detection with CRISPR-Cas13a/C2c2.

Jonathan S Gootenberg, Omar O Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J Dy, Julia Joung, Vanessa Verdine, Nina Donghia, Nichole M Daringer, Catherine A Freije and 9 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,552 papers.

0numbers the graph read from it
0cells of the map it votes in
1,552citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,552 citing papers in PubMed.

  1. Trial
  2. CRISPR/Cas Systems: Biological Basis and Genome Editing Applications.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. CRISPR-Programmable Nanoparticle Transport in Salt-Gated Porous Media for Visual DNA Detection.Chemical engineering journal (Lausanne, Switzerland : 1996) · 2026
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

1,492 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Jonathan S GootenbergBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-2757-2175
Omar O AbudayyehBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-7979-3220
Jeong Wook LeeWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.ORCID 0000-0003-0705-0177
Patrick EssletzbichlerBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-2237-0005
Aaron J DyBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-0319-5416
Julia JoungBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Vanessa VerdineBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-5864-738X
Nina DonghiaWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
Nichole M DaringerInstitute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.ORCID 0000-0002-2026-8130
Catherine A FreijeBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-1939-3102
Cameron MyhrvoldBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-8971-184X
Roby P BhattacharyyaBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0001-6955-5088
Jonathan LivnyBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0001-6589-3020
Aviv RegevBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-3293-3158
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.ORCID 0000-0003-3943-8299
Deborah T HungBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0003-4262-0673
Pardis C SabetiBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA.ORCID 0000-0002-9843-1890
James J CollinsBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA. zhang@broadinstitute.org jimjc@mit.edu.ORCID 0000-0002-5560-8246
Feng ZhangBroad Institute of MIT and Harvard, Cambridge, MA 02142, USA. zhang@broadinstitute.org jimjc@mit.edu.ORCID 0000-0003-0178-7995

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
RNA based diagnostics for rapid pathogen identification and drug resistanceR01AI117043 · NIAID · BROAD INSTITUTE, INC. · PI HUNG, DEBORAH T · 2015 to 2019
$6.5M
Massively-parallel functional interrogation of psychiatric geneticsR01MH110049 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2015 to 2019
$5.5M
Probing Neuropsychiatric Diseases Using Targeted Epigenome and Genome EngineeringDP1MH100706 · NIMH · BROAD INSTITUTE, INC. · PI ZHANG, FENG · 2012 to 2016
$4.3M
Bioinformatic and functional analysis of antibiotic-responsive small non-coding RNAs in bacterial pathogensK08AI119157 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BHATTACHARYYA, ROBY PAUL · 2015 to 2018
$758k
Characterization of a novel RNA-guided endoRNAse and applications towards genome-wide screening for non-coding RNA roles in melanoma resistanceF30CA210382 · NCI · HARVARD MEDICAL SCHOOL · PI ABUDAYYEH, OMAR O · 2016 to 2018
$78k
Howard Hughes Medical InstituteNCI NIH HHS F30 CA210382NIAID NIH HHS K08 AI119157NIAID NIH HHS R01 AI117043NIAID NIH HHS T32 AI007061NIMH NIH HHS DP1 MH100706NIMH NIH HHS R01 MH110049
6 · The paper itself

Abstract

Rapid, inexpensive, and sensitive nucleic acid detection may aid point-of-care pathogen detection, genotyping, and disease monitoring. The RNA-guided, RNA-targeting clustered regularly interspaced short palindromic repeats (CRISPR) effector Cas13a (previously known as C2c2) exhibits a "collateral effect" of promiscuous ribonuclease activity upon target recognition. We combine the collateral effect of Cas13a with isothermal amplification to establish a CRISPR-based diagnostic (CRISPR-Dx), providing rapid DNA or RNA detection with attomolar sensitivity and single-base mismatch specificity. We use this Cas13a-based molecular detection platform, termed Specific High-Sensitivity Enzymatic Reporter UnLOCKing (SHERLOCK), to detect specific strains of Zika and Dengue virus, distinguish pathogenic bacteria, genotype human DNA, and identify mutations in cell-free tumor DNA. Furthermore, SHERLOCK reaction reagents can be lyophilized for cold-chain independence and long-term storage and be readily reconstituted on paper for field applications.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsPoint-of-Care SystemsBacteriaBacterial ProteinsCirculating Tumor DNADengueDengue VirusDNA, BacterialHumansMutationNeoplasmsRibonucleasesRNA CleavageRNA, ViralZika VirusZika Virus InfectionBacterial ProteinsCirculating Tumor DNADNA, BacterialRibonucleasesRNA, Viral

Identifiers

PMID28408723
PMCPMC5526198

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.