Evidence map›Paper›PMID 28408400›Full record

ArticleCancer discovery2017

Epigenetic Identity in AML Depends on Disruption of Nonpromoter Regulatory Elements and Is Affected by Antagonistic Effects of Mutations in Epigenetic Modifiers.

Jacob L Glass, Duane Hassane, Bas J Wouters, Hiroyoshi Kunimoto, Roberto Avellino, Francine E Garrett-Bakelman, Olga A Guryanova, Robert Bowman, Shira Redlich, Andrew M Intlekofer and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer discovery, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 142 citations in OpenAlex.

  1. Frontiers in pharmacology · 2025
    Pooled it
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Jacob L GlassLeukemia Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Duane HassaneInstitute of Computational Biomedicine, Weill Medical College of Cornell University, New York, New York.
Bas J WoutersDepartment of Medicine, Hematology/Oncology Division, Weill Medical College of Cornell University, New York, New York.
Hiroyoshi KunimotoHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Roberto AvellinoDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands.
Francine E Garrett-BakelmanDepartment of Medicine, Hematology/Oncology Division, Weill Medical College of Cornell University, New York, New York.
Olga A GuryanovaHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Robert BowmanHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Shira RedlichHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Andrew M IntlekoferHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Cem MeydanDepartment of Medicine, University of Virginia, Charlottesville, Virginia.
Tingting QinDepartment of Pathology, University of Michigan Medical School, Ann Arbor, Michigan.
Mame FallEpigenomics Core Facility, Weill Medical College of Cornell University, New York, New York.
Alicia AlonsoEpigenomics Core Facility, Weill Medical College of Cornell University, New York, New York.
Monica L GuzmanDepartment of Medicine, Hematology/Oncology Division, Weill Medical College of Cornell University, New York, New York.
Peter J M ValkDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands.
Craig B ThompsonHuman Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.
Ross LevineLeukemia Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, New York.
Olivier ElementoInstitute of Computational Biomedicine, Weill Medical College of Cornell University, New York, New York.
Ruud DelwelDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands. mef162@miami.edu amm2014@med.cornell.edu h.delwel@erasmusmc.nl.
Ari MelnickDepartment of Medicine, Hematology/Oncology Division, Weill Medical College of Cornell University, New York, New York. mef162@miami.edu amm2014@med.cornell.edu h.delwel@erasmusmc.nl.
Maria E FigueroaDepartment of Human Genetics and Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, Florida. mef162@miami.edu amm2014@med.cornell.edu h.delwel@erasmusmc.nl.
Cornell University · USMemorial Sloan Kettering Cancer Center · USErasmus MC · NLSylvester Comprehensive Cancer Center · USUniversity of Michigan · USUniversity of Virginia · US

Funding

Investigational Cancer Therapeutics Training Program (ICTTP)T32CA009207 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Omar Abdel-Wahab, Alexander Drilon · 1985 to 2026
$13.7M
Understanding and Targeting Chemotherapy Resistance in Acute Myeloid LeukemiaR01CA198089 · NCI · UNIVERSITY OF PENNSYLVANIA · PI CARROLL, MARTIN · 2015 to 2019
$3.3M
Epigenetic biomarkers of response to Azacytidine in Myelodysplastic SyndromesR01HL126947 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FIGUEROA, MARIA EUGENIA · 2015 to 2018
$1.6M
Biologic and therapeutic relevance of DNMT3A mutations in acute myeloid leukemiaR00CA178191 · NCI · UNIVERSITY OF FLORIDA · PI GURYANOVA, OLGA A · 2016 to 2018
$759k
Genetic and epigenetic basis of relapse in acute myeloid leukemiaK08CA169055 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI GARRETT-BAKELMAN, FRANCINE EVALINA · 2012 to 2016
$742k
Biologic and therapeutic relevance of DNMT3A mutations in acute myeloid leukemiaK99CA178191 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GURYANOVA, OLGA A · 2013 to 2014
$196k
NCI NIH HHS K08 CA169055NCI NIH HHS K99 CA178191NCI NIH HHS R00 CA178191NCI NIH HHS R01 CA198089NCI NIH HHS T32 CA009207NHLBI NIH HHS R01 HL126947
6 · The paper itself

Abstract

We performed cytosine methylation sequencing on genetically diverse patients with acute myeloid leukemia (AML) and found leukemic DNA methylation patterning is primarily driven by nonpromoter regulatory elements and CpG shores. Enhancers displayed stronger differential methylation than promoters, consisting predominantly of hypomethylation. AMLs with dominant hypermethylation featured greater epigenetic disruption of promoters, whereas those with dominant hypomethylation displayed greater disruption of distal and intronic regions. Mutations in

Indexed as

AdultAgedAnimalsDisease Models, AnimalDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3AEnhancer Elements, GeneticEpigenesis, GeneticFemaleHumansIsocitrate DehydrogenaseLeukemia, Myeloid, AcuteMaleMiddle AgedMutationDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNMT3A protein, humanDnmt3a protein, mouseIDH1 protein, humanIDH2 protein, humanIsocitrate Dehydrogenaseras Proteins

Identifiers

PMID28408400
PMCPMC5540802
OpenAlexW2606122123

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.