Evidence map›Paper›PMID 28405784›Full record

ArticlePlant molecular biology2017

Genomic and functional characterization of coleopteran insect-specific α-amylase inhibitor gene from Amaranthus species.

Amey J Bhide, Sonal M Channale, Yashpal Yadav, Kabita Bhattacharjee, Pankaj K Pawar, V L Maheshwari, Vidya S Gupta, Sureshkumar Ramasamy, Ashok P Giri

Abstract read
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In one paragraph

Article in Plant molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  5. Article
  6. Article
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  8. Article
  9. The Amylases of Insects.International journal of insect science · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Amey J BhidePlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Sonal M ChannalePlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Yashpal YadavPlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Kabita BhattacharjeePlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Pankaj K PawarDepartment of Biochemistry, Shivaji University, Kolhapur, 416 004, India.
V L MaheshwariSchool of Life Sciences, North Maharashtra University, Jalgaon, 425 001, India.
Vidya S GuptaPlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Sureshkumar RamasamyPlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India.
Ashok P GiriPlant Molecular Biology Unit, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune, 411 008, India. ap.giri@ncl.res.in.
National Chemical Laboratory · INNorth Maharashtra University · INShivaji University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The smallest 32 amino acid α-amylase inhibitor from Amaranthus hypochondriacus (AAI) is reported. The complete gene of pre-protein (AhAI) encoding a 26 amino acid (aa) signal peptide followed by the 43 aa region and the previously identified 32 aa peptide was cloned successfully. Three cysteine residues and one disulfide bond conserved within known α-amylase inhibitors were present in AhAI. Identical genomic and open reading frame was found to be present in close relatives of A. hypochondriacus namely Amaranthus paniculatus, Achyranthes aspera and Celosia argentea. Interestingly, the 3'UTR of AhAI varied in these species. The highest expression of AhAI was observed in A. hypochondriacus inflorescence; however, it was not detected in the seed. We hypothesized that the inhibitor expressed in leaves and inflorescence might be transported to the seeds. Sub-cellular localization studies clearly indicated the involvement of AhAI signal peptide in extracellular secretion. Full length rAhAI showed differential inhibition against α-amylases from human, insects, fungi and bacteria. Particularly, α-amylases from Helicoverpa armigera (Lepidoptera) were not inhibited by AhAI while Tribolium castaneum and Callosobruchus chinensis (Coleoptera) α-amylases were completely inhibited. Molecular docking of AhAI revealed tighter interactions with active site residues of T. castaneum α-amylase compared to C. chinensis α-amylase, which could be the rationale behind the disparity in their IC

Indexed as

Achyranthesalpha-AmylasesAmaranthusAmino Acid SequenceAnimalsCelosiaCloning, MolecularColeopteraEnzyme InhibitorsGene Expression Regulation, PlantModels, MolecularPlant ProteinsProtein ConformationProtein Transportalpha-AmylasesEnzyme InhibitorsPlant ProteinsAmaranthus hypochondriacusCallosobruchus chinensisSignal peptideTribolium castaneumα-Amylaseα-Amylase inhibitor

Identifiers

PMID28405784
OpenAlexW2607178217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.