Evidence map›Paper›PMID 28405742›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2017

CRISPR/Cas9-mediated deletion of lncRNA Gm26878 in the distant Foxf1 enhancer region.

Przemyslaw Szafranski, Justyna A Karolak, Denise Lanza, Marzena Gajęcka, Jason Heaney, Paweł Stankiewicz

Open access · greenAbstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 30 citations in OpenAlex.

  1. Knocking Down Long Noncoding RNAs Using Antisense Oligonucleotide Gapmers.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. Review
  3. EMT signaling: potential contribution of CRISPR/Cas gene editing.Cellular and molecular life sciences : CMLS · 2020
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Przemyslaw SzafranskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Justyna A KarolakDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Denise LanzaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Marzena GajęckaDepartment of Genetics and Pharmaceutical Microbiology, Poznan University of Medical Sciences, Poznan, Poland.
Jason HeaneyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA. heaney@bcm.edu.
Paweł StankiewiczDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA. pawels@bcm.edu.
Baylor College of Medicine · USPolish Academy of Sciences · PLPoznan University of Medical Sciences · PL

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Pathogenetics of the FOX transcription factor gene cluster on 16q24.1R01HL101975 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI STANKIEWICZ, PAWEL · 2010 to 2013
$1.8M
National Organization for Rare Disorders NORD grants 2012 and 2014National Organization for Rare Disorders RO1HL101975NCI NIH HHS P30 CA125123NHLBI NIH HHS R01 HL101975
6 · The paper itself

Abstract

Recent genome editing techniques, including CRISPR mutagenesis screens, offer unparalleled opportunities to study the regulatory non-coding genomic regions, enhancers, promoters, and functional non-coding RNAs. Heterozygous point mutations in FOXF1 and genomic deletion copy-number variants at chromosomal region 16q24.1 involving FOXF1 or its regulatory region mapping ~300 kb upstream of FOXF1 and leaving it intact have been identified in the vast majority of patients with a lethal neonatal lung disease, alveolar capillary dysplasia with misalignment of pulmonary veins (ACDMPV). Homozygous Foxf1

Indexed as

CRISPR-Cas SystemsEnhancer Elements, GeneticGene EditingSequence DeletionAllelesAnimalsBinding SitesForkhead Transcription FactorsGene DosageGene ExpressionGene Knockout TechniquesGenotypeHumansMiceMice, KnockoutMutagenesisForkhead Transcription FactorsFoxf1 protein, mouseRNA, Long NoncodingDeletion AlleleGenome EditinglncRNA GeneTranscription Factor Binding SiteUCSC Genome Browser

Identifiers

PMID28405742
PMCPMC6502246
OpenAlexW2606991668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.