Evidence map›Paper›PMID 28405197›Full record

ArticleFrontiers in plant science2017

Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites.

Dimitrios J Floros, Daniel Petras, Clifford A Kapono, Alexey V Melnik, Tie-Jun Ling, Rob Knight, Pieter C Dorrestein

Abstract read
In one paragraph

Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Advances in Mass Spectrometry-Metabolomics Based Approaches.Advances in experimental medicine and biology · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Chemical Cartography Approaches to Study Trypanosomatid Infection.Journal of visualized experiments : JoVE · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Meta-mass shift chemical profiling of metabolomes from coral reefs.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dimitrios J FlorosSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA.
Daniel PetrasSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA.
Clifford A KaponoSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA.
Alexey V MelnikSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA.
Tie-Jun LingSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural UniversityHefei, China.
Rob KnightDepartment of Computer Science and Engineering, University of California, San Diego, San DiegoCA, USA; Center for Microbiome Innovation, University of California, San Diego, San DiegoCA, USA; Department of Pediatrics, University of California, San Diego, San DiegoCA, USA.
Pieter C DorresteinSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, San DiegoCA, USA; Center for Microbiome Innovation, University of California, San Diego, San DiegoCA, USA.

Funding

TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PEVZNER, PAVEL A · 2012 to 2018
$8.7M
Synapt ion mobility mass spectrometerS10RR029121 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2011 to 2011
$802k
NCRR NIH HHS S10 RR029121NIGMS NIH HHS P41 GM103484
6 · The paper itself

Abstract

Plants play an essential part in global carbon fixing through photosynthesis and are the primary food and energy source for humans. Understanding them thoroughly is therefore of highest interest for humanity. Advances in DNA and RNA sequencing and in protein and metabolite analysis allow the systematic description of plant composition at the molecular level. With imaging mass spectrometry, we can now add a spatial level, typically in the micrometer-to-centimeter range, to their compositions, essential for a detailed molecular understanding. Here we present an LC-MS based approach for 3D plant imaging, which is scalable and allows the analysis of entire plants. We applied this approach in a case study to pepper and tomato plants. Together with MS/MS spectra library matching and spectral networking, this non-targeted workflow provides the highest sensitivity and selectivity for the molecular annotations and imaging of plants, laying the foundation for studies of plant metabolism and plant-environment interactions.

Indexed as

3D-imagingimaging mass spectrometrypepperplant metabolomicstomato

Identifiers

PMID28405197
PMCPMC5370242

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.