Evidence map›Paper›PMID 28404779›Full record

ReviewProceedings. Biological sciences2017

Open data and digital morphology.

Thomas G Davies, Imran A Rahman, Stephan Lautenschlager, John A Cunningham, Robert J Asher, Paul M Barrett, Karl T Bates, Stefan Bengtson, Roger B J Benson, Doug M Boyer and 35 more

Abstract readReview
In one paragraph

Review in Proceedings. Biological sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
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  14. Article
  15. Review
  16. Article
  17. Review
  18. 3D Morphological Scanning and Environmental Correlates ofAnimals : an open access journal from MDPI · 2024
    Article
  19. Article
  20. Opportunities and Challenges in Applying AI to Evolutionary Morphology.Integrative organismal biology (Oxford, England) · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

45 authors.

Thomas G DaviesSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Imran A RahmanSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.ORCID http://orcid.org/0000-0001-6598-6534
Stephan LautenschlagerSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.ORCID http://orcid.org/0000-0003-3472-814X
John A CunninghamSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Robert J AsherMuseum of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK.
Paul M BarrettDept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK.ORCID http://orcid.org/0000-0003-0412-3000
Karl T BatesInstitute of Ageing and Chronic Disease, University of Liverpool, Liverpool L7 8TX, UK.
Stefan BengtsonDept. Palaeobiology, Swedish Museum of Natural History, PO Box 50007, 104 05 Stockholm, Sweden.
Roger B J BensonDept. Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK.
Doug M BoyerDept. Evolutionary Anthropology, Duke University, PO Box 90383, Biological Sciences Building, 130 Science Drive, Durham, NC 27708, USA.
José BragaComputer-assisted Palaeoanthropology Team, UMR 5288 CNRS-Université de Toulouse (Paul Sabatier), Toulouse, France.
Jen A BrightSchool of Geosciences, University of South Florida, Tampa, FL 33620, USA.ORCID http://orcid.org/0000-0002-9284-9591
Leon P A M ClaessensDept. Biology, College of the Holy Cross, Worcester, MA 01610, USA.ORCID http://orcid.org/0000-0002-1873-6070
Philip G CoxDept. Archaeology and Hull York Medical School, University of York, York YO10 5DD, UK.ORCID http://orcid.org/0000-0001-9782-2358
Xi-Ping DongSchool of Earth and Space Science, Peking University, Beijing 100871, People's Republic of China.
Alistair R EvansSchool of Biological Sciences, Monash University, Victoria 3800, Australia.
Peter L FalkinghamSchool of Natural Sciences and Psychology, Liverpool John Moores University, Liverpool, UK.ORCID http://orcid.org/0000-0003-1856-8377
Matt FriedmanDept. Earth and Environmental Sciences and Museum of Paleontology, University of Michigan, Ann Arbor, MI 48109, USA.
Russell J GarwoodDept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK.
Anjali GoswamiDept. Genetics, Evolution and Environment, and Dept. Earth Sciences, University College London, Gower Street, London SW17 7PL, UK.
John R HutchinsonStructure and Motion Lab, Dept. Comparative Biomedical Sciences, The Royal Veterinary College, Hawkshead Lane, Hatfield, Hertfordshire AL9 7TA, UK.
Nathan S JefferyInstitute of Ageing and Chronic Disease, University of Liverpool, Liverpool L7 8TX, UK.
Zerina JohansonDept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK.ORCID http://orcid.org/0000-0002-8444-6776
Renaud LebrunInstitut des Sciences de l'Evolution de Montpellier, CC64, Université de Montpellier, campus Triolet, Place Eugène Bataillon, 34095 Montpellier cedex 5, France.
Carlos Martínez-PérezSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Jesús Marugán-LobónUnidad de Paleontología, Dpto. Biología, Universidad Autónoma de Madrid, 28049 Cantoblanco, Spain.ORCID http://orcid.org/0000-0002-3766-8560
Paul M O'HigginsDept. Archaeology and Hull York Medical School, University of York, York YO10 5DD, UK.
Brian MetscherDept. Theoretical Biology, University of Vienna, Althanstrasse 14, 1090, Austria.ORCID http://orcid.org/0000-0002-6514-4406
Maëva OrliacInstitut des Sciences de l'Evolution de Montpellier, CC64, Université de Montpellier, campus Triolet, Place Eugène Bataillon, 34095 Montpellier cedex 5, France.
Timothy B RoweJackson School of Geosciences C1100, The University of Texas at Austin, Austin, TX 78712, USA.
Martin RücklinSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.ORCID http://orcid.org/0000-0002-7254-837X
Marcelo R Sánchez-VillagraPaläontologisches Institut und Museum der Universität Zürich, Karl Schmid Strasse 4, 8006 Zürich, Switzerland.
Neil H ShubinDept. Organismal Biology & Anatomy, University of Chicago, Chicago, IL 60637, USA.
Selena Y SmithDept. Earth and Environmental Sciences and Museum of Paleontology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID http://orcid.org/0000-0002-5923-0404
J Matthias StarckDept. Biology II, Ludwig-Maximilians University Munich (LMU), Großhadernerstr. 2, 82152 Planegg-Martinsried, Germany.
Chris StringerDept. Earth Sciences, Natural History Museum, Cromwell Road, London SW7 5BD, UK.
Adam P SummersUniversity of Washington, Friday Harbor Labs, Friday Harbor, WA 98250, USA.
Mark D SuttonDept. Earth Science and Engineering, Imperial College, London SW7 2AZ, UK.
Stig A WalshNational Museums Scotland, Chambers Street, Edinburgh EH1 1JF, UK.
Vera WeisbeckerSchool of Biological Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia.
Lawrence M WitmerDept. Biomedical Sciences, Ohio University Heritage College of Osteopathic Medicine, Athens, OH 45701, USA.
Stephen WroeSchool of Environmental and Rural Science, University of New England, Armidale, New South Wales 2351, Australia.
Zongjun YinSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK.
Emily J RayfieldSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK e.rayfield@bristol.ac.uk.ORCID http://orcid.org/0000-0002-2618-750X
Philip C J DonoghueSchool of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TQ, UK phil.donoghue@bristol.ac.uk.ORCID http://orcid.org/0000-0003-3116-7463

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise that the widespread application of such methods would facilitate access to the underlying digital data has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for three-dimensional digital data publication, and review the issues around data storage, management and accessibility.

Indexed as

Datasets as TopicBiological Science DisciplinesData CurationReproducibility of ResultsResearchcomputed tomographydigital datafunctional analysisphenotypethree-dimensional modelsvisualization

Identifiers

PMID28404779
PMCPMC5394671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.