Evidence map›Paper›PMID 28403821›Full record

ArticleBMC genomics2017

Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment.

Sweta Roy-Carson, Kevin Natukunda, Hsien-Chao Chou, Narinder Pal, Caitlin Farris, Stephan Q Schneider, Julie A Kuhlman

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 43 citations in OpenAlex.

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  16. Development, Diversity, and Neurogenic Capacity of Enteric Glia.Frontiers in cell and developmental biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sweta Roy-CarsonDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Kevin NatukundaDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Hsien-Chao ChouDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Narinder PalDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Caitlin FarrisDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Stephan Q SchneiderDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Julie A KuhlmanDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, 50011, USA. jkuhlman@iastate.edu.
Iowa State University · USNational Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMotility and the coordination of moving food through the gastrointestinal tract rely on a complex network of neurons known as the enteric nervous system (ENS). Despite its critical function, many of the molecular mechanisms that direct the development of the ENS and the elaboration of neural network connections remain unknown. The goal of this study was to transcriptionally identify molecular pathways and candidate genes that drive specification, differentiation and the neural circuitry of specific neural progenitors, the phox2b expressing ENS cell lineage, during normal enteric nervous system development. Because ENS development is tightly linked to its environment, the transcriptional landscape of the cellular environment of the intestine was also analyzed.

resultsThousands of zebrafish intestines were manually dissected from a transgenic line expressing green fluorescent protein under the phox2b regulatory elements [Tg(phox2b:EGFP)

conclusionWe report the comprehensive gene expression profiles of a lineage-specific population of enteric progenitors, their derivatives, and their microenvironment during normal enteric nervous system development. Our results confirm previously implicated genes and pathways required for ENS development, and also identify scores of novel candidate genes and pathways. Thus, our dataset suggests various potential mechanisms that drive ENS development facilitating characterization and discovery of novel therapeutic strategies to improve gastrointestinal disorders.

Indexed as

AnimalsCell DifferentiationCell LineageCell MovementCellular MicroenvironmentEnteric Nervous SystemGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksHomeodomain ProteinsNeurogenesisSequence Analysis, RNATranscription FactorsZebrafishHomeodomain ProteinsNBPhox proteinTranscription FactorsEnteric nervous systemHirschsprungsNeural crestphox2bRNA-sequencingTranscriptomeZebrafish

Identifiers

PMID28403821
PMCPMC5389105
OpenAlexW2606635185

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.