Evidence map›Paper›PMID 28398459›Full record

ArticleBioinformatics (Oxford, England)2017

MISA-web: a web server for microsatellite prediction.

Sebastian Beier, Thomas Thiel, Thomas Münch, Uwe Scholz, Martin Mascher

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,619 papers.

0numbers the graph read from it
0cells of the map it votes in
1,619citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,619 citing papers in PubMed.

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  18. A Compact Multipartite Mitogenome ofInternational journal of molecular sciences · 2026
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  19. The Pan-Plastome of Walnuts (International journal of molecular sciences · 2026
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  20. Complete plastome data of rareData in brief · 2026
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1,559 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sebastian BeierLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, 06466 Seeland, Germany.
Thomas ThielKWS Saat SE, Grimsehlstr. 31, 37555 Einbeck, Germany.
Thomas MünchLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, 06466 Seeland, Germany.
Uwe ScholzLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, 06466 Seeland, Germany.
Martin MascherLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstr. 3, 06466 Seeland, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationMicrosatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging.

resultsWe extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. AVAILABILITY AND IMPLEMENTATION: MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code. CONTACT: scholz@ipk-gatersleben.de.

Indexed as

Genome, PlantMicrosatellite RepeatsSoftwareGenomicsInternetPlantsSequence Analysis, DNA

Identifiers

PMID28398459
PMCPMC5870701

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.