Evidence map›Paper›PMID 28397965›Full record

ArticleJournal of clinical laboratory analysis2018

Comparison of three multiplex PCR assays for detection of respiratory viruses: Anyplex II RV16, AdvanSure RV, and Real-Q RV.

Seung Gyu Yun, Min Young Kim, Jong Moon Choi, Chang Kyu Lee, Chae Seung Lim, Yunjung Cho, In Bum Suh

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Agreement of respiratory viruses' detection between nasopharyngeal swab and bronchoalveolar lavage in adults admitted for pneumonia: a retrospective study.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2023
    Article
  3. Article
  4. Treatment of Respiratory Viral Coinfections.Epidemiologia (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Seung Gyu YunDepartment of Laboratory Medicine, Korea University College of Medicine, Seoul, Korea.ORCID http://orcid.org/0000-0002-9915-9681
Min Young KimArmed Forces Medical Research Institute, Daejeon, Korea.
Jong Moon ChoiDepartment of Laboratory Medicine, Seoul National University College of Medicine, Seoul, Korea.
Chang Kyu LeeDepartment of Laboratory Medicine, Korea University College of Medicine, Seoul, Korea.
Chae Seung LimDepartment of Laboratory Medicine, Korea University College of Medicine, Seoul, Korea.
Yunjung ChoDepartment of Laboratory Medicine, Korea University College of Medicine, Seoul, Korea.
In Bum SuhDepartment of Laboratory Medicine, Kangwon National University School of Medicine, Chuncheon, Korea.
Korea University · KRKangwon National University · KRArmed Forces Research Institute of Medical Science · THSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDue to its great sensitivity, the nucleic acid amplification test (NAAT) is widely used for detection of respiratory viruses (RV). However, few reports have described a direct comparison between multiplex RT-PCR assays for RV. The objective of this study was to perform a direct comparison of three multiplex RT-PCR assays for the detection of respiratory viruses.

methodsA total of 201 respiratory samples (161 nasopharyngeal swab samples and 40 sputum samples) were tested with three commercial RV assays: Seegene Anyplex II RV16 (AP), LG AdvanSure RV (AD), and Biosewoom Real-Q RV (RQ). The additional tests for the discrepant results were conducted by repeat RV assay or monoplex PCR coupled direct sequencing. Data analysis using percent agreement, kappa, and prevalence-adjusted and bias-adjusted kappa (PABAK) values was performed for comparisons among the three RV assays.

resultsOf the 201 samples, AP, AD, and RQ detected 105 (52.2%), 99 (49.3%), and 95 (47.3%) positive cases respectively. The overall agreement, kappa, and PABAK values for the three assays ranged between 97%-98%, 0.76-0.86, and 0.93-0.96 respectively. The performance of the three assays was very similar, with 94%-100% agreement for all comparisons, each virus types. The additional testing of samples showed discrepant results demonstrating that AD assay had the highest rate of concordance with original results.

conclusionsWe suggest that all multiplex assay would be suitable for the detection of for respiratory viruses in clinical setting.

Indexed as

AdolescentAdultHumansMaleMolecular Diagnostic TechniquesMultiplex Polymerase Chain ReactionReproducibility of ResultsRespiratory Tract InfectionsSensitivity and SpecificityVirus DiseasesVirusesYoung Adultagreementnucleic acid amplification testrespiratory virus

Identifiers

PMID28397965
PMCPMC5836940
OpenAlexW2606223391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.