Evidence map›Paper›PMID 28396964›Full record

ArticleJournal of plant research2017

Space-time analysis of gravitropism in etiolated Arabidopsis hypocotyls using bioluminescence imaging of the IAA19 promoter fusion with a destabilized luciferase reporter.

Kotaro T Yamamoto, Masaaki K Watahiki, Jun Matsuzaki, Soichirou Satoh, Hisayo Shimizu

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Journal of plant research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Growth-mediated plant movements: hidden in plain sight.Current opinion in plant biology · 2018
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kotaro T YamamotoDivision of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan. kty@sci.hokudai.ac.jp.
Masaaki K WatahikiDivision of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
Jun MatsuzakiDivision of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
Soichirou SatohDivision of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
Hisayo ShimizuBiosystems Science Course, Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan.
Hokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Imaging analysis was carried out during the gravitropic response of etiolated Arabidopsis hypocotyls, using an IAA19 promoter fusion of destabilized luciferase as a probe. From the bright-field images we obtained the local deflection angle to the vertical, A, local curvature, C, and the partial derivative of C with respect to time, [Formula: see text]. These were determined every 19.9 µm along the curvilinear length of the hypocotyl, at ~10 min intervals over a period of ~6 h after turning hypocotyls through 90° to the horizontal. Similarly from the luminescence images we measured the luminescence intensity of the convex and concave flanks of the hypocotyl as well as along the median of the hypocotyl, to determine differential expression of auxin-inducible IAA19. Comparison of these parameters as a function of time and curvilinear length shows that the gravitropic response is composed of three successive elements: the first and second curving responses and a decurving response (autostraightening). The maximum of the first curving response occurs when A is 76° along the entire length of the hypocotyl, suggesting that A is the sole determinant in this response; in contrast, the decurving response is a function of both A and C, as predicted by the newly-proposed graviproprioception model (Bastien et al., Proc Natl Acad Sci USA 110:755-760, 2013). Further, differential expression of IAA19, with higher expression in the convex flank, is observed at A = 44°, and follows the Sachs' sine law. This also suggests that IAA19 is not involved in the first curving response. In summary, the gravitropic response of Arabidopsis hypocotyls consists of multiple elements that are each determined by separate principles.

Indexed as

Gene Expression Regulation, PlantGravitropismArabidopsisArabidopsis ProteinsEtiolationHypocotylIndoleacetic AcidsLightLuciferasesMutationPlant Growth RegulatorsPlants, Genetically ModifiedPromoter Regions, GeneticSeedlingsArabidopsis ProteinsIAA19 protein, ArabidopsisIndoleacetic AcidsLuciferasesPlant Growth RegulatorsArabidopsisAux/IAAAuxinBioluminescence imagingGravitropismHypocotyl

Identifiers

PMID28396964
PMCPMC6105228
OpenAlexW2607325928

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.