Evidence map›Paper›PMID 28396619›Full record

ArticleHereditas2017

The complete mitogenome of

D S J Groenenberg, J Harl, E Duijm, E Gittenberger

Open access · goldAbstract read
In one paragraph

Article in Hereditas, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. The nearly complete mitochondrial genome of the door snailMitochondrial DNA. Part B, Resources · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 3 countries.

D S J GroenenbergNaturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands.
J HarlCentral Research Laboratories, Museum of Natural History Vienna, Vienna, Austria.
E DuijmNaturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands.
E GittenbergerNaturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands.
Naturalis Biodiversity Center · NLNatural History Museum Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWith the increasing capacity of present-day next-generation sequencers the field of mitogenomics is rapidly changing. Enrichment of the mitochondrial fraction, is no longer necessary for obtaining mitogenomic data. Despite the benefits, shotgun sequencing approaches also have disadvantages. They do not guarantee obtaining the

resultsA sequence of the complete mitochondrial genome of the pupilloid landsnail

conclusionsWe show it is feasible to ultra-deep sequence a mitogenome from a single LR-PCR. This approach is particularly relevant to studies that have low concentrations of input DNA. It results in a more efficient use of NGS capacity (only the targeted fraction is sequenced) and is an effective selection against nuclear mitochondrial inserts (NUMTS). In contrast to previous studies based in particular on 28S, our results indicate that phylogeny reconstructions based on complete mitogenomes might be more suitable to resolve deep relationships within Stylommatophora. Ancestral gene order reconstructions reveal rearrangements that characterize systematic groups.

Indexed as

Genome, MitochondrialHigh-Throughput Nucleotide SequencingAnimalsDNA, MitochondrialGene OrderPhylogenyPolymerase Chain ReactionRNA, RibosomalRNA, TransferSequence Analysis, DNASnailsDNA, MitochondrialRNA, RibosomalRNA, TransferGene arrangementMitochondrial genomeOrthurethraStylommatophora

Identifiers

PMID28396619
PMCPMC5379511
OpenAlexW2604309993

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.