Evidence map›Paper›PMID 28396582›Full record

ArticleScientific reports2017

A Pair of Maternal Chromosomes Derived from Meiotic Nondisjunction in Trisomy 21 Affects Nuclear Architecture and Transcriptional Regulation.

Sayaka Omori, Hideyuki Tanabe, Kimihiko Banno, Ayumi Tsuji, Nobutoshi Nawa, Katsuya Hirata, Keiji Kawatani, Chikara Kokubu, Junji Takeda, Hidetoshi Taniguchi and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Sayaka OmoriDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Hideyuki TanabeDepartment of Evolutionary Studies of Biosystems, School of Advanced Sciences, SOKENDAI (The Graduate University for Advanced Studies), Shonan Village, Hayama, Kanagawa, 240-0193, Japan.
Kimihiko BannoDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Ayumi TsujiDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Nobutoshi NawaDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Katsuya HirataDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Keiji KawataniDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Chikara KokubuDepartment of Genome Biology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Junji TakedaDepartment of Genome Biology, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Hidetoshi TaniguchiDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Hitomi ArahoriDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Kazuko WadaDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Yasuji KitabatakeDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan. ykitaba@ped.med.osaka-u.ac.jp.
Keiichi OzonoDepartment of Pediatrics, Graduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Osaka University · JPThe Graduate University for Advanced Studies, SOKENDAI · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eukaryotic genomes are organised into complex higher-order structures within the nucleus, and the three-dimensional arrangement of chromosomes is functionally important for global gene regulation. The existence of supernumerary chromosome 21 in Down syndrome may perturb the nuclear architecture at different levels, which is normally optimised to maintain the physiological balance of gene expression. However, it has not been clearly elucidated whether and how aberrant configuration of chromosomes affects gene activities. To investigate the effects of trisomy 21 on nuclear organisation and gene expression, we performed three-dimensional fluorescent imaging analysis of chromosome-edited human induced pluripotent stem cells (iPSCs), which enabled identification of the parental origin of the three copies of chromosome 21. We found that two copies of maternal chromosomes resulting from meiotic nondisjunction had a higher tendency to form an adjacent pair and were located relatively distant from the nuclear membrane, suggesting the conserved interaction between these homologous chromosomes. Transcriptional profiling of parental-origin-specific corrected disomy 21 iPSC lines indicated upregulated expression of the maternal alleles for a group of genes, which was accompanied by a fluctuating expression pattern. These results suggest the unique effects of a pair of maternal chromosomes in trisomy 21, which may contribute to the pathological phenotype.

Indexed as

Chromosomes, Human, Pair 21Maternal InheritanceMeiosisNondisjunction, GeneticTranscription, GeneticCell LineCell NucleusDown SyndromeGene Expression RegulationGene TargetingGenetic LociHumansInduced Pluripotent Stem CellsIn Situ Hybridization, FluorescencePhenotypeTrisomy

Identifiers

PMID28396582
PMCPMC5429678
OpenAlexW2604449538

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.