Evidence map›Paper›PMID 28396463›Full record

ArticleMolecular cancer research : MCR2017

Blind SELEX Approach Identifies RNA Aptamers That Regulate EMT and Inhibit Metastasis.

Sorah Yoon, Brian Armstrong, Nagy Habib, John J Rossi

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Review
  6. Pancreatic Cancer: Nucleic Acid Drug Discovery and Targeted Therapy.Frontiers in cell and developmental biology · 2022
    Review
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Biomedical Applications of RNA-Based Devices.Current opinion in biomedical engineering · 2017
    Article
  16. Emerging cancer-specific therapeutic aptamers.Current opinion in oncology · 2017
    Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sorah YoonDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California.
Brian ArmstrongLight Microscopy Core, City of Hope, Duarte, California.
Nagy HabibDepartment of Surgery and Cancer, Imperial College London, London, United Kingdom.
John J RossiDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California. jrossi@coh.org.
Imperial College London · GB

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
COMBINATORIAL USE OF CCR5 RIBOZYMES WITH ANTI HIV1 RNASR01AI042552 · NIAID · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI ROSSI, JOHN JOSEPH · 1998 to 2019
$7.8M
Expression of anti-HIV siRNA in Blood CellsR01HL074704 · NHLBI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BURNETT, JOHN CORY, ROSSI, JOHN JOSEPH · 2003 to 2015
$5.0M
YEAST SYSTEM FOR DEVELOPING ANTI-HIV-1 RIBOZYMESR01AI029329 · NIAID · LOMA LINDA UNIVERSITY · PI ROSSI, JOHN JOSEPH · 1990 to 2018
$3.9M
NCI NIH HHS P30 CA033572NHLBI NIH HHS R01 HL074704NIAID NIH HHS R01 AI029329NIAID NIH HHS R01 AI042552
6 · The paper itself

Abstract

Identifying targets that are exposed on the plasma membrane of tumor cells, but expressed internally in normal cells, is a fundamental issue for improving the specificity and efficacy of anticancer therpeutics. Using blind cell Systemic Evolution of Ligands by EXponetial enrichment (SELEX), which is untargeted SELEX, we have identified an aptamer, P15, which specifically bound to the human pancreatic adenocarcinoma cells. To identify the aptamer binding plasma membrane protein, liquid chromatography tandem mass spectrometry (LC-MS/MS) was used. The results of this unbiased proteomic mass spectrometry approach identified the target of P15 as the intermediate filament vimentin, biomarker of epithelial-mesenchymal transition (EMT), which is an intracellular protein but is specifically expressed on the plasma membrane of cancer cells. As EMT plays a pivotal role to transit cancer cells to invasive cells, tumor cell metastasis assays were performed

Indexed as

AdenocarcinomaAptamers, NucleotideBiomarkers, TumorCell Line, TumorEpithelial-Mesenchymal TransitionGene Expression Regulation, NeoplasticHumansLigandsMatrix Metalloproteinase 3Neoplasm InvasivenessNeoplasm MetastasisPancreatic NeoplasmsProteomicsSELEX Aptamer TechniqueAptamers, NucleotideBiomarkers, TumorLigandsMatrix Metalloproteinase 3MMP3 protein, human

Identifiers

PMID28396463
PMCPMC5555160
OpenAlexW2605450139

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.