Evidence map›Paper›PMID 28396444›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly.

Aida Razi, Alba Guarné, Joaquin Ortega

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Ribosome inactivation byFrontiers in microbiology · 2023
    Article
  9. GTPase Era at the heart of ribosome assembly.Frontiers in molecular biosciences · 2023
    Review
  10. Article
  11. Review
  12. Mitoribosomal small subunit maturation involves formation of initiation-like complexes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Aida RaziDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8S4K1.
Alba GuarnéDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8S4K1.
Joaquin OrtegaDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada L8S4K1; ortegaj@mcmaster.ca.

Funding

CIHR MOP-67189CIHR MOP-82930
6 · The paper itself

Abstract

Recent work suggests that bacterial YjeQ (RsgA) participates in the late stages of assembly of the 30S subunit and aids the assembly of the decoding center but also binds the mature 30S subunit with high affinity. To determine the function and mechanisms of YjeQ in the context of the mature subunit, we determined the cryo-EM structure of the fully assembled 30S subunit in complex with YjeQ at 5.8-Å resolution. We found that binding of YjeQ stabilizes helix 44 into a conformation similar to that adopted by the subunit during proofreading. This finding indicates that, along with acting as an assembly factor, YjeQ has a role as a checkpoint protein, consisting of testing the proofreading ability of the 30S subunit. The structure also informs the mechanism by which YjeQ implements the release from the 30S subunit of a second assembly factor, called RbfA. Finally, it reveals how the 30S subunit stimulates YjeQ GTPase activity and leads to release of the protein. Checkpoint functions have been described for eukaryotic ribosome assembly factors; however, this work describes an example of a bacterial assembly factor that tests a specific translation mechanism of the 30S subunit.

Indexed as

Cryoelectron MicroscopyEscherichia coli K12Escherichia coli ProteinsGTP PhosphohydrolasesProtein BindingProtein Structure, QuaternaryProtein Structure, SecondaryRibosomal ProteinsRibosome Subunits, Small, BacterialEscherichia coli ProteinsGTP PhosphohydrolasesRbfA protein, E coliRibosomal ProteinsRsgA protein, E coli30S subunitcryo-electron microscopyribosome assemblyRsgA proteinYjeQ protein

Identifiers

PMID28396444
PMCPMC5410845

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.