Evidence map›Paper›PMID 28393228›Full record

ArticleMolecular medicine reports2017

Microarray‑based screening of differentially expressed genes in glucocorticoid‑induced avascular necrosis.

Gangyong Huang, Yibing Wei, Guanglei Zhao, Jun Xia, Siqun Wang, Jianguo Wu, Feiyan Chen, Jie Chen, Jingshen Shi

Open access · hybridAbstract read
In one paragraph

Article in Molecular medicine reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Gangyong HuangDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Yibing WeiDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Guanglei ZhaoDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Jun XiaDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Siqun WangDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Jianguo WuDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Feiyan ChenDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Jie ChenDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Jingshen ShiDepartment of Orthopaedics, Huashan Hospital, Fudan University, Shanghai 200040, P.R. China.
Huashan Hospital · CNFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The underlying mechanisms of glucocorticoid (GC)‑induced avascular necrosis of the femoral head (ANFH) have yet to be fully understood, in particular the mechanisms associated with the change of gene expression pattern. The present study aimed to identify key genes with a differential expression pattern in GC‑induced ANFH. E‑MEXP‑2751 microarray data were downloaded from the ArrayExpress database. Differentially expressed genes (DEGs) were identified in 5 femoral head samples of steroid‑induced ANFH rats compared with 5 placebo‑treated rat samples. Gene Ontology (GO) and pathway enrichment analyses were performed upon these DEGs. A total 93 DEGs (46 upregulated and 47 downregulated genes) were identified in GC‑induced ANFH samples. These DEGs were enriched in different GO terms and pathways, including chondrocyte differentiation and detection of chemical stimuli. The enrichment map revealed that skeletal system development was interconnected with several other GO terms by gene overlap. The literature mined network analysis revealed that 5 upregulated genes were associated with femoral necrosis, including parathyroid hormone receptor 1 (PTHR1), vitamin D (1,25‑Dihydroxyvitamin D3) receptor (VDR), collagen, type II, α1, proprotein convertase subtilisin/kexin type 6 and zinc finger protein 354C (ZFP354C). In addition, ZFP354C and VDR were identified to transcription factors. Furthermore, PTHR1 was revealed to interact with VDR, and α‑2‑macroglobulin (A2M) interacted with fibronectin 1 (FN1) in the PPI network. PTHR1 may be involved in GC‑induced ANFH via interacting with VDR. A2M may also be involved in the development of GC‑induced ANFH through interacting with FN1. An improved understanding of the molecular mechanisms underlying GC‑induced ANFH may provide novel targets for diagnostics and therapeutic treatment.

Indexed as

Gene Expression ProfilingGene Expression RegulationTranscriptomeComputational BiologyDatabases, Nucleic AcidFemur Head NecrosisGene OntologyGene Regulatory NetworksGlucocorticoidsHumansProtein Interaction MappingProtein Interaction MapsGlucocorticoids

Identifiers

PMID28393228
PMCPMC5436162
OpenAlexW2605111856

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.