Evidence map›Paper›PMID 28389540›Full record

ArticleApplied and environmental microbiology2017

Acid Evolution of Escherichia coli K-12 Eliminates Amino Acid Decarboxylases and Reregulates Catabolism.

Amanda He, Stephanie R Penix, Preston J Basting, Jessie M Griffith, Kaitlin E Creamer, Dominic Camperchioli, Michelle W Clark, Alexandra S Gonzales, Jorge Sebastian Chávez Erazo, Nadja S George and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Adaptive laboratory evolution ofFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Adaptive laboratory evolution ofMicrobiology (Reading, England) · 2020
    Article
  16. Acid Experimental Evolution of the HaloarchaeonFrontiers in microbiology · 2020
    Article
  17. Microbial response to acid stress: mechanisms and applications.Applied microbiology and biotechnology · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Amanda HeDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Stephanie R PenixDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Preston J BastingDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Jessie M GriffithDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Kaitlin E CreamerDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Dominic CamperchioliDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Michelle W ClarkDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Alexandra S GonzalesDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Jorge Sebastian Chávez ErazoDepartment of Biology, Kenyon College, Gambier, Ohio, USA.
Nadja S GeorgeEnvironmental Microbiology and Food Safety Laboratory, Beltsville Agricultural Research Center, U.S. Department of Agriculture, Beltsville, Maryland, USA.
Arvind A BhagwatEnvironmental Microbiology and Food Safety Laboratory, Beltsville Agricultural Research Center, U.S. Department of Agriculture, Beltsville, Maryland, USA.
Joan L SlonczewskiDepartment of Biology, Kenyon College, Gambier, Ohio, USA slonczewski@kenyon.edu.
Kenyon College · USBeltsville Agricultural Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acid-adapted strains of

Indexed as

AcidsAromatic-L-Amino-Acid DecarboxylasesBiological EvolutionEscherichia coli K12Escherichia coli ProteinsGene Expression Regulation, BacterialHydrogen-Ion ConcentrationAcidsAromatic-L-Amino-Acid DecarboxylasesEscherichia coli ProteinsaciddecarboxylaseEscherichia coliexperimental evolutionfnrGABAlow pHRNA polymerase

Identifiers

PMID28389540
PMCPMC5452808
OpenAlexW2605166689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.