Evidence map›Paper›PMID 28388949›Full record

ArticleBMC veterinary research2017

Characterization and virulence clustering analysis of extraintestinal pathogenic Escherichia coli isolated from swine in China.

Yinchu Zhu, Wenyang Dong, Jiale Ma, Lvfeng Yuan, Hassan M A Hejair, Zihao Pan, Guangjin Liu, Huochun Yao

Abstract read
In one paragraph

Article in BMC veterinary research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Extraintestinal PathogenicVeterinary sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Comprehensive Analysis ofMicroorganisms · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Porcine extraintestinal pathogenicFrontiers in cellular and infection microbiology · 2023
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Extended Phylogeny and Extraintestinal Virulence Potential of CommensalInternational journal of environmental research and public health · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yinchu ZhuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Wenyang DongCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Jiale MaCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Lvfeng YuanCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Hassan M A HejairCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Zihao PanCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Guangjin LiuCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Huochun YaoCollege of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China. yaohch@njau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSwine extraintestinal pathogenic Escherichia coli (ExPEC) is an important pathogen that leads to economic and welfare costs in the swine industry worldwide, and is occurring with increasing frequency in China. By far, various virulence factors have been recognized in ExPEC. Here, we investigated the virulence genotypes and clonal structure of collected strains to improve the knowledge of phylogenetic traits of porcine ExPECs in China.

resultsWe isolated 64 Chinese porcine ExPEC strains from 2013 to 14 in China. By multiplex PCR, the distribution of isolates belonging to phylogenetic groups B1, B2, A and D was 9.4%, 10.9%, 57.8% and 21.9%, respectively. Nineteen virulence-related genes were detected by PCR assay; ompA, fimH, vat, traT and iutA were highly prevalent. Virulence-related genes were remarkably more prevalent in group B2 than in groups A, B1 and D; notably, usp, cnf1, hlyD, papA and ibeA were only found in group B2 strains. Genotyping analysis was performed and four clusters of strains (named I to IV) were identified. Cluster IV contained all isolates from group B2 and Cluster IV isolates had the strongest pathogenicity in a mouse infection model. As phylogenetic group B2 and D ExPEC isolates are generally considered virulent, multilocus sequence typing (MLST) analysis was performed for these isolates to further investigate genetic relationships. Two novel sequence types, ST5170 and ST5171, were discovered. Among the nine clonal complexes identified among our group B2 and D isolates, CC12 and CC95 have been indicated to have high zoonotic pathogenicity. The distinction between group B2 and non-B2 isolates in virulence and genotype accorded with MLST analysis.

conclusionThis study reveals significant genetic diversity among ExPEC isolates and helps us to better understand their pathogenesis. Importantly, our data suggest group B2 (Cluster IV) strains have the highest risk of causing animal disease and illustrate the correlation between genotype and virulence.

Indexed as

AnimalsChinaEscherichia coli InfectionsExtraintestinal Pathogenic Escherichia coliGenetic VariationMiceMultilocus Sequence TypingPhylogenySwineSwine DiseasesVirulenceVirulence FactorsVirulence FactorsGenotypeMultilocus sequence typingPorcine extraintestinal pathogenic Escherichia coliVirulence

Identifiers

PMID28388949
PMCPMC5385051

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.