Evidence map›Paper›PMID 28388887›Full record

ArticleBMC pulmonary medicine2017

A burden of rare variants in BMPR2 and KCNK3 contributes to a risk of familial pulmonary arterial hypertension.

Koichiro Higasa, Aiko Ogawa, Chikashi Terao, Masakazu Shimizu, Shinji Kosugi, Ryo Yamada, Hiroshi Date, Hiromi Matsubara, Fumihiko Matsuda

Open access · goldAbstract read
In one paragraph

Article in BMC pulmonary medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Defining the clinical validity of genes reported to cause pulmonary arterial hypertension.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  2. Review
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  5. Article
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  7. Article
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  9. Ion Channels in Pulmonary Hypertension: A Therapeutic Interest?International journal of molecular sciences · 2018
    Review
  10. Article
  11. Advances in the Genetics of Hypertension: The Effect of Rare Variants.International journal of molecular sciences · 2018
    Review
  12. Article
  13. Genetics of Pulmonary Arterial Hypertension.Seminars in respiratory and critical care medicine · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Koichiro HigasaHuman Disease Genomics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kawara-cho 53, Shogoin, Sakyo-ku, Kyoto, 606-8507, Japan. higasa@genome.med.kyoto-u.ac.jp.
Aiko OgawaDepartment of Clinical Science, National Hospital Organization Okayama Medical Center, Okayama, Japan.
Chikashi TeraoHuman Disease Genomics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kawara-cho 53, Shogoin, Sakyo-ku, Kyoto, 606-8507, Japan.
Masakazu ShimizuHuman Disease Genomics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kawara-cho 53, Shogoin, Sakyo-ku, Kyoto, 606-8507, Japan.
Shinji KosugiDepartment of Medical Ethics/Medical Genetics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Ryo YamadaStatistical Genetics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Hiroshi DateDepartment of Thoracic Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Hiromi MatsubaraDepartment of Clinical Science, National Hospital Organization Okayama Medical Center, Okayama, Japan.
Fumihiko MatsudaHuman Disease Genomics, Center for Genomic Medicine, Kyoto University Graduate School of Medicine, Kawara-cho 53, Shogoin, Sakyo-ku, Kyoto, 606-8507, Japan.
Kyoto University · JPNational Hospital Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPulmonary arterial hypertension (PAH) is a severe lung disease with only few effective treatments available. Familial cases of PAH are usually recognized as an autosomal dominant disease, but incomplete penetrance of the disease makes it difficult to identify pathogenic variants in accordance with a Mendelian pattern of inheritance.

methodsTo elucidate the complex genetic basis of PAH, we obtained whole exome- or genome-sequencing data of 17 subjects from 9 families with heritable PAH and applied gene-based association analysis with 9 index patients and 300 PAH-free controls.

resultsA burden of rare variants in BMPR2 significantly contributed to the risk of the disease (p = 6.0 × 10

conclusionsThe variety of rare pathogenic variants suggests that gene-based association analysis using genome-wide sequencing data from increased number of samples is essential to tracing the genetic heterogeneity and developing an appropriate panel for genetic testing.

Indexed as

Genetic Predisposition to DiseaseAdultBone Morphogenetic Protein Receptors, Type IIFamilial Primary Pulmonary HypertensionFamily HealthFemaleGenetic TestingHumansJapanMaleNerve Tissue ProteinsPotassium Channels, Tandem Pore DomainRisk FactorsBMPR2 protein, humanBone Morphogenetic Protein Receptors, Type IINerve Tissue ProteinsPotassium Channels, Tandem Pore Domainpotassium channel subfamily K member 3Clinical genetic testingGene-based association studyNext generation sequencingPulmonary arterial hypertension

Identifiers

PMID28388887
PMCPMC5383973
OpenAlexW2604171271

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.