Evidence map›Paper›PMID 28388670›Full record

ArticlePloS one2017

Transcriptomic and physiological analyses of Medicago sativa L. roots in response to lead stress.

Bo Xu, Yingzhe Wang, Shichao Zhang, Qiang Guo, Yan Jin, Jingjing Chen, Yunhang Gao, Hongxia Ma

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Changes induced by lead in root system architecture of Arabidopsis seedlings are mediated by PDR2-LPR1/2 phosphate dependent way.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2021
    Article
  8. Article
  9. Review
  10. Review
  11. The Overexpression of a Transcription Factor GeneFrontiers in plant science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Bo XuCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Yingzhe WangAgro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, Jilin, China.
Shichao ZhangCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Qiang GuoCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Yan JinCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Jingjing ChenCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Yunhang GaoCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.ORCID http://orcid.org/0000-0001-5701-6685
Hongxia MaCollege of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin, China.
Jilin Agricultural University · CNJilin Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lead (Pb) is one of the nonessential and toxic metals that threaten the environment and human health. Medicago sativa L. is a legume with high salt tolerance and high biomass production. It is not only a globally important forage crop but is also an ideal plant for phytoremediation. However, the biological and molecular mechanisms that respond to heavy metals are still not well defined in M. sativa. In this study, de novo and strand-specific RNA-sequencing was performed to identify genes involved in the Pb stress response in M. sativa roots. A total of 415,350 unigenes were obtained from the assembled cDNA libraries, among which 5,416 were identified as significantly differentially expressed genes (DEGs) (false discovery rate < 0.005) between cDNA libraries from control and Pb-treated plants. Gene ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of the DEGs showed they mainly clustered with terms associated with binding, transport, membranes, and the pathways related to signal and energy metabolism. Moreover, a number of candidate genes included antioxidant enzymes, metal transporters, and transcription factors involved in heavy metal response were upregulated under Pb stress. Quantitative real-time PCR(qRT-PCR) validation of the expression patterns of 10 randomly selected candidate DEGs were consistent with the transcriptome analysis results. Thus, this study offers new information towards the investigation of biological changes and molecular mechanisms related to Pb stress response in plants.

Indexed as

Stress, PhysiologicalTranscriptomeDNA, PlantGenes, PlantLeadMedicago sativaPlant RootsReal-Time Polymerase Chain ReactionDNA, PlantLead

Identifiers

PMID28388670
PMCPMC5384761
OpenAlexW2605344745

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.