Evidence map›Paper›PMID 28387567›Full record

ArticlePlant signaling & behavior2017

Whole-transcriptome RNA-seq, gene set enrichment pathway analysis, and exon coverage analysis of two plastid RNA editing mutants.

Justin B Hackett, Yan Lu

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Modern Approaches for Transcriptome Analyses in Plants.Advances in experimental medicine and biology · 2021
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Justin B Hacketta Department of Biological Sciences , Western Michigan University , Kalamazoo , MI , USA.ORCID 0000-0001-6532-4522
Yan Lua Department of Biological Sciences , Western Michigan University , Kalamazoo , MI , USA.ORCID 0000-0002-3374-7376
Western Michigan University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In land plants, plastid and mitochondrial RNAs are subject to post-transcriptional C-to-U RNA editing. T-DNA insertions in the ORGANELLE RNA RECOGNITION MOTIF PROTEIN6 gene resulted in reduced photosystem II (PSII) activity and smaller plant and leaf sizes. Exon coverage analysis of the ORRM6 gene showed that orrm6-1 and orrm6-2 are loss-of-function mutants. Compared to other ORRM proteins, ORRM6 affects a relative small number of RNA editing sites. Sanger sequencing of reverse transcription-PCR products of plastid transcripts revealed 2 plastid RNA editing sites that are substantially affected in the orrm6 mutants: psbF-C77 and accD-C794. The psbF gene encodes the β subunit of cytochrome b

Indexed as

ArabidopsisArabidopsis ProteinsDNA, BacterialExonsGene Expression Regulation, PlantPhotosystem II Protein ComplexPlastidsRNA EditingRNA, PlantRNA Recognition Motif ProteinsArabidopsis ProteinsDNA, BacterialORRM6 protein, ArabidopsisPhotosystem II Protein ComplexRNA, PlantRNA Recognition Motif ProteinsT-DNAArabidopsis thalianaexon coverage analysisgenerally applicable gene-set enrichment for pathway analysisorganelle RNA recognition motifplastid RNA editingSanger sequencingwholetranscriptome RNA-seq

Identifiers

PMID28387567
PMCPMC5501230
OpenAlexW2604628919

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.