Evidence map›Paper›PMID 28386113›Full record

ArticleScientific reports2017

Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton.

Muhammad Zubair, Syed Shan-E-Ali Zaidi, Sara Shakir, Muhammad Farooq, Imran Amin, Jodi A Scheffler, Brian E Scheffler, Shahid Mansoor

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Muhammad ZubairNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Syed Shan-E-Ali ZaidiNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.ORCID http://orcid.org/0000-0002-2976-4624
Sara ShakirCentre for Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Pakistan.
Muhammad FarooqNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Imran AminNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Jodi A SchefflerUSDA-ARS, Crop Genetics Research Unit, 141 Experiment Station Rd, Stoneville, MS, 38776, USA.
Brian E SchefflerUSDA-ARS, Genomics and Bioinformatics Research Unit, 141 Experiment Station Rd, Stoneville, MS, 38776, USA.ORCID http://orcid.org/0000-0003-1968-8952
Shahid MansoorNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan. Shahidmansoor7@gmail.com.
National Institute for Biotechnology and Genetic Engineering · PKAgricultural Research Service · USUniversity of Agriculture Faisalabad · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first epidemic of cotton leaf curl disease (CLCuD) in early 1990's in the Indian subcontinent was associated with several distinct begomoviruses along with a disease-specific betasatellite. Resistant cotton varieties were introduced in late 1990's but soon resistance was broken and was associated with a single recombinant begomovirus named Burewala strain of Cotton leaf curl Kokhran virus that lacks a full complement of a gene encoding a transcription activator protein (TrAP). In order to understand the ongoing changes in CLCuD complex in Pakistan, CLCuD affected plants from cotton fields at Vehari were collected. Illumina sequencing was used to assess the diversity of CLCuD complex. At least three distinct begomoviruses characterized from the first epidemic; Cotton leaf curl Multan virus, Cotton leaf curl Kokhran virus and Cotton leaf curl Alabad virus, several distinct species of alphasatellites and cotton leaf curl Multan betasatellite were found associated with CLCuD. These viruses were also cloned and sequenced through Sanger sequencing to confirm the identity of the begomoviruses and that all clones possessed a full complement of the TrAP gene. A new strain of betasatellite was identified here and named CLCuMuB

Indexed as

BegomovirusDNA, SatelliteDNA, ViralGenome, ViralGenomicsGossypiumHigh-Throughput Nucleotide SequencingOpen Reading FramesPakistanPhylogenyPlant DiseasesPlant LeavesRecombination, GeneticDNA, SatelliteDNA, Viral

Identifiers

PMID28386113
PMCPMC5429635
OpenAlexW2604083487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.