Evidence map›Paper›PMID 28386071›Full record

ArticleScientific reports2017

TbIRK is a signature sequence free potassium channel from Trypanosoma brucei locating to acidocalcisomes.

Michael E Steinmann, Remo S Schmidt, Peter Bütikofer, Pascal Mäser, Erwin Sigel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Insights into3 Biotech · 2023
    Article
  5. Review
  6. New insights into the role of acidocalcisomes in trypanosomatids.The Journal of eukaryotic microbiology · 2022
    Review
  7. The IPBiochimica et biophysica acta. Molecular cell research · 2021
    Review
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Michael E SteinmannInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.
Remo S SchmidtSwiss Tropical and Public Health Institute, Basel, Switzerland.ORCID http://orcid.org/0000-0002-6599-9201
Peter BütikoferInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland.
Pascal MäserSwiss Tropical and Public Health Institute, Basel, Switzerland.
Erwin SigelInstitute of Biochemistry and Molecular Medicine, University of Bern, Bern, Switzerland. sigel@ibmm.unibe.ch.
University of Bern · CHSwiss Tropical and Public Health Institute · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potassium channels from prokaryotes and eukaryotes are usually recognized by a typical amino acid sequence TXTGY(F)G representing the ionic selectivity filter. Using a screening approach with ion channel family profiles but without the above motif, we identified a gene in Trypanosoma brucei that exhibits homology to inward rectifying potassium channels. We report here cloning of this ion channel named TbIRK. The protein is localized to acidocalcisomes in procyclic and in bloodstream form parasites. Functional properties of this channel were established after expression in Xenopus oocytes. Currents recorded in potassium medium show inward rectification and little time dependence. Surprisingly, this channel retains selectivity for potassium ions over sodium ions >7, in spite of the lack of the classical selectivity filter. The sequence GGYVG was predicted in silico to replace this filter motif. Point mutations of the corresponding glycine residues confirmed this at the functional level. The channel is inhibited by caesium ions but remains unaffected by barium ions up to 10 mM. TbIRK is to our knowledge the first potassium channel in T. brucei that localizes to the acidocalcisomes, organelles involved in the storage of phosphates and the response to osmotic stress that occurs during the life cycle of trypanosomes.

Indexed as

Amino Acid MotifsIon Channel GatingAmino Acid SequenceAnimalsCloning, MolecularElectrophysiological PhenomenaGene ExpressionGene Expression RegulationOocytesPoint MutationPotassium Channels, Inwardly RectifyingRNA InterferenceSequence Analysis, DNATrypanosoma brucei bruceiXenopus laevisPotassium Channels, Inwardly Rectifying

Identifiers

PMID28386071
PMCPMC5429665
OpenAlexW2600747393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.