Evidence map›Paper›PMID 28386063›Full record

ArticleScientific reports2017

Case-control analysis of truncating mutations in DNA damage response genes connects TEX15 and FANCD2 with hereditary breast cancer susceptibility.

Tuomo Mantere, Anna Tervasmäki, Anna Nurmi, Katrin Rapakko, Saila Kauppila, Jiangbo Tang, Johanna Schleutker, Anne Kallioniemi, Jaana M Hartikainen, Arto Mannermaa and 16 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 11 institutions in 4 countries.

Tuomo MantereLaboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit and Biocenter Oulu, Northern Finland Laboratory Centre Nordlab Oulu, University of Oulu, Oulu, Finland.ORCID http://orcid.org/0000-0003-3284-4403
Anna TervasmäkiLaboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit and Biocenter Oulu, Northern Finland Laboratory Centre Nordlab Oulu, University of Oulu, Oulu, Finland.
Anna NurmiDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Katrin RapakkoLaboratory of Genetics, Northern Finland Laboratory Centre NordLab Oulu, Oulu, Finland.
Saila KauppilaDepartment of Pathology, Oulu University Hospital and University of Oulu, Oulu, Finland.
Jiangbo TangDepartments of Cancer Biology and Pathology, Abramson Family Cancer Research Institute, Basser Research Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Johanna SchleutkerMedical Biochemistry and Genetics Institute of Biomedicine, University of Turku, Turku, Finland.ORCID http://orcid.org/0000-0002-1863-0305
Anne KallioniemiBioMediTech and FimLab Laboratories, University of Tampere, Tampere, Finland.
Jaana M HartikainenSchool of Medicine, Institute of Clinical Medicine, Pathology and Forensic Medicine, University of Eastern Finland, Kuopio, Finland.
Arto MannermaaSchool of Medicine, Institute of Clinical Medicine, Pathology and Forensic Medicine, University of Eastern Finland, Kuopio, Finland.
Pentti NieminenMedical Informatics and Statistics Research Group, University of Oulu, Oulu, Finland.ORCID http://orcid.org/0000-0003-0591-586X
Riitta HanhisaloLaboratory of Genetics, Northern Finland Laboratory Centre NordLab Oulu, Oulu, Finland.
Sini LehtoDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Maija SuvantoDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Mervi GripDepartment of Surgery, Oulu University Hospital and University of Oulu, Oulu, Finland.
Arja Jukkola-VuorinenDepartment of Oncology, Oulu University Hospital and University of Oulu, Oulu, Finland.
Maria TengströmCancer Center of Eastern Finland, University of Eastern Finland, Kuopio, Finland.
Päivi AuvinenCancer Center of Eastern Finland, University of Eastern Finland, Kuopio, Finland.
Anders KvistDepartment of Oncology and Pathology, Department of Clinical Sciences Lund, Lund University, Medicon Village, Lund, Sweden.ORCID http://orcid.org/0000-0002-1358-0695
Åke BorgDepartment of Oncology and Pathology, Department of Clinical Sciences Lund, Lund University, Medicon Village, Lund, Sweden.
Carl BlomqvistDepartment of Oncology, Helsinki University Hospital, Helsinki, Finland.
Kristiina AittomäkiDepartment of Clinical Genetics, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Roger A GreenbergDepartments of Cancer Biology and Pathology, Abramson Family Cancer Research Institute, Basser Research Center for BRCA, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Robert WinqvistLaboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit and Biocenter Oulu, Northern Finland Laboratory Centre Nordlab Oulu, University of Oulu, Oulu, Finland. robert.winqvist@oulu.fi.
Heli NevanlinnaDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.ORCID http://orcid.org/0000-0002-0916-2976
Katri PylkäsLaboratory of Cancer Genetics and Tumor Biology, Cancer and Translational Medicine Research Unit and Biocenter Oulu, Northern Finland Laboratory Centre Nordlab Oulu, University of Oulu, Oulu, Finland. katri.pylkas@oulu.fi.
NordLab · FIUniversity of Helsinki · FIUniversity of Eastern Finland · FIOulu University Hospital · FICancer Research Institute · USLund University · SEÖrebro University · SETampere University · FIUniversity Hospital of Lausanne · CHUniversity of Oulu · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several known breast cancer susceptibility genes encode proteins involved in DNA damage response (DDR) and are characterized by rare loss-of-function mutations. However, these explain less than half of the familial cases. To identify novel susceptibility factors, 39 rare truncating mutations, identified in 189 Northern Finnish hereditary breast cancer patients in parallel sequencing of 796 DDR genes, were studied for disease association. Mutation screening was performed for Northern Finnish breast cancer cases (n = 578-1565) and controls (n = 337-1228). Mutations showing potential cancer association were analyzed in additional Finnish cohorts. c.7253dupT in TEX15, encoding a DDR factor important in meiosis, associated with hereditary breast cancer (p = 0.018) and likely represents a Northern Finnish founder mutation. A deleterious c.2715 + 1G > A mutation in the Fanconi anemia gene, FANCD2, was over two times more common in the combined Finnish hereditary cohort compared to controls. A deletion (c.640_644del5) in RNF168, causative for recessive RIDDLE syndrome, had high prevalence in majority of the analyzed cohorts, but did not associate with breast cancer. In conclusion, truncating variants in TEX15 and FANCD2 are potential breast cancer risk factors, warranting further investigations in other populations. Furthermore, high frequency of RNF168 c.640_644del5 indicates the need for its testing in Finnish patients with RIDDLE syndrome symptoms.

Indexed as

DNA DamageGenetic Predisposition to DiseaseMutationAllelesBiomarkers, TumorBreast NeoplasmsCase-Control StudiesCell Cycle ProteinsDNA Mutational AnalysisFanconi Anemia Complementation Group D2 ProteinFemaleGene FrequencyGenetic Association StudiesGenotypeGerm-Line MutationHumansBiomarkers, TumorCell Cycle ProteinsFANCD2 protein, humanFanconi Anemia Complementation Group D2 ProteinRNA, MessengerTEX15 protein, human

Identifiers

PMID28386063
PMCPMC5429682
OpenAlexW2602882693

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.