Evidence map›Paper›PMID 28384203›Full record

ArticlePloS one2017

Comprehensive characterization of DNA methylation changes in Fuchs endothelial corneal dystrophy.

Emily Khuc, Russell Bainer, Marie Wolf, Selene M Clay, Daniel J Weisenberger, Jacquelyn Kemmer, Valerie M Weaver, David G Hwang, Matilda F Chan

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. New perspectives on DNA methylation modifications in ocular diseases.International journal of ophthalmology · 2025
    Review
  11. Role of epigenetics in corneal health and disease.Progress in retinal and eye research · 2025
    Review
  12. Article
  13. Review
  14. Article
  15. Epigenetic Regulation of Corneal Epithelial Differentiation by TET2.International journal of molecular sciences · 2023
    Article
  16. Review
  17. Diseases of the corneal endothelium.Experimental eye research · 2021
    Review
  18. Review
  19. Collagen Remodeling Plays a Pivotal Role in Endothelial Corneal Dystrophies.Investigative ophthalmology & visual science · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Emily KhucDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0001-9646-5643
Russell BainerDepartment of Surgery and Center for Bioengineering and Tissue Regeneration, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0002-0830-7029
Marie WolfDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0003-2207-9664
Selene M ClayDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.
Daniel J WeisenbergerDepartment of Biochemistry and Molecular Medicine, University of Southern California, Los Angeles, California, United States of America.ORCID http://orcid.org/0000-0001-8303-2603
Jacquelyn KemmerDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.ORCID http://orcid.org/0000-0002-7266-9868
Valerie M WeaverDepartment of Surgery and Center for Bioengineering and Tissue Regeneration, University of California, San Francisco, California, United States of America.
David G HwangDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.
Matilda F ChanDepartment of Ophthalmology, University of California, San Francisco, California, United States of America.
University of California, San Francisco · USUniversity of Southern California · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAKKARAJU, APARNA · 1985 to 2024
$16.8M
Regulation of Corneal Repair by MetalloproteinasesR01EY022739 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAN, MATILDA F · 2013 to 2017
$2.0M
NCRR NIH HHS UL1 RR024131NEI NIH HHS P30 EY002162NEI NIH HHS R01 EY022739
6 · The paper itself

Abstract

Transparency of the human cornea is necessary for vision. Fuchs Endothelial Corneal Dystrophy (FECD) is a bilateral, heritable degeneration of the corneal endothelium, and a leading indication for corneal transplantation in developed countries. While the early onset, and rarer, form of FECD has been linked to COL8A2 mutations, the more common, late onset form of FECD has genetic mutations linked to only a minority of cases. Epigenetic modifications that occur in FECD are unknown. Here, we report on and compare the DNA methylation landscape of normal human corneal endothelial (CE) tissue and CE from FECD patients using the Illumina Infinium HumanMethylation450 (HM450) DNA methylation array. We show that DNA methylation profiles are distinct between control and FECD samples. Differentially methylated probes (10,961) were identified in the FECD samples compared with the control samples, with the majority of probes being hypermethylated in the FECD samples. Genes containing differentially methylated sites were disproportionately annotated to ontological categories involving cytoskeletal organization, ion transport, hematopoetic cell differentiation, and cellular metabolism. Our results suggest that altered DNA methylation patterns may contribute to loss of corneal transparency in FECD through a global accumulation of sporadic DNA methylation changes in genes critical to basic CE biological processes.

Indexed as

DNA MethylationAgedAged, 80 and overEndothelium, CornealFemaleFuchs' Endothelial DystrophyHumansMaleMiddle Aged

Identifiers

PMID28384203
PMCPMC5383226
OpenAlexW2604809316

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.