Evidence map›Paper›PMID 28384097›Full record

ArticleeLife2017

Domestic chickens activate a piRNA defense against avian leukosis virus.

Yu Huining Sun, Li Huitong Xie, Xiaoyu Zhuo, Qiang Chen, Dalia Ghoneim, Bin Zhang, Jarra Jagne, Chengbo Yang, Xin Zhiguo Li

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
14.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Animal virus-host interactions mediated by non-coding RNAs.Frontiers in cellular and infection microbiology · 2026
    Review
  3. Article
  4. Enigmatic Pachytene PIWI-Interacting RNAs.Genome biology and evolution · 2024
    Review
  5. piRNA associates with immune diseases.Cell communication and signaling : CCS · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  14. Article
  15. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Yu Huining SunCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, Department of Urology, University of Rochester Medical Center, Rochester, United States.ORCID 0000-0003-0333-2898
Li Huitong XieCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, Department of Urology, University of Rochester Medical Center, Rochester, United States.
Xiaoyu ZhuoDepartment of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, United States.ORCID 0000-0002-1400-5609
Qiang ChenCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, Department of Urology, University of Rochester Medical Center, Rochester, United States.
Dalia GhoneimCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, Department of Urology, University of Rochester Medical Center, Rochester, United States.
Bin ZhangDepartment of Pathology and Laboratory Medicine, Department of Pediatrics, University of Rochester Medical Center, Rochester, United States.
Jarra JagneAnimal Health Diagnostic Center, Cornell University College of Veterinary Medicine, Ithaca, United States.
Chengbo YangDepartment of Animal Science, University of Manitoba, Winnipeg, Canada.
Xin Zhiguo LiCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, Department of Urology, University of Rochester Medical Center, Rochester, United States.ORCID 0000-0001-6803-4600
University of Rochester Medical Center · USCornell University · USUniversity of Manitoba · CA

Funding

RESEARCH EDUCATION PROGRAM ON COMPUTATIONAL AND STATISTICAL TOOL DEVELOPMENT FOR ADDICTION GENETICSR25DA027995 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN, RICE, JOHN P. · 2009 to 2019
$4.3M
Dissect the piRNA regulatory mechanism during spermatogenesisR00HD078482 · NICHD · UNIVERSITY OF ROCHESTER · PI LI, XIN · 2015 to 2017
$729k
NICHD NIH HHS R00 HD078482NIDA NIH HHS R25 DA027995
6 · The paper itself

Abstract

PIWI-interacting RNAs (piRNAs) protect the germ line by targeting transposable elements (TEs) through the base-pair complementarity. We do not know how piRNAs co-evolve with TEs in chickens. Here we reported that all active TEs in the chicken germ line are targeted by piRNAs, and as TEs lose their activity, the corresponding piRNAs erode away. We observed de novo piRNA birth as host responds to a recent retroviral invasion. Avian leukosis virus (ALV) has endogenized prior to chicken domestication, remains infectious, and threatens poultry industry. Domestic fowl produce piRNAs targeting ALV from one ALV provirus that was known to render its host ALV resistant. This proviral locus does not produce piRNAs in undomesticated wild chickens. Our findings uncover rapid piRNA evolution reflecting contemporary TE activity, identify a new piRNA acquisition modality by activating a pre-existing genomic locus, and extend piRNA defense roles to include the period when endogenous retroviruses are still infectious.

Indexed as

Evolution, MolecularAnimalsAvian Leukosis VirusChickensProvirusesRNA, Small InterferingRNA, Small Interferingchickendevelopmental biologyendogenous retrovirusevolutionary biologygenomicspiRNAPIWIRed Jungle Fowlstem cellstransposable elementWhite Leghorn

Identifiers

PMID28384097
PMCPMC5383398
OpenAlexW2605013413

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.