Evidence map›Paper›PMID 28383997›Full record

ArticleAIDS research and human retroviruses2017

Full Genome Characterization of a New Simian Immune Deficiency Virus Lineage in a Naturally Infected Cercopithecus ascanius whitesidei in the Democratic Republic of Congo Reveals High Genetic Diversity Among Red-Tailed Monkeys in Central and Eastern Africa.

Steve Ahuka-Mundeke, Placide Mbala-Kingebeni, Simon-Pierre Ndimbo-Kumogo, Caroline Foncelle, Octavie Lunguya-Metila, Jean-Jacques Muyembe-Tamfum, Eric Delaporte, Martine Peeters, Ahidjo Ayouba

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Steve Ahuka-Mundeke1 UMI 233 TransVIHMI/INSERM1175, Institut de Recherche pour le Développement (IRD), University of Montpellier , Montpellier, France .
Placide Mbala-Kingebeni2 Institut National de Recherche Biomédicales , Kinshasa, Democratic Republic of Congo.
Simon-Pierre Ndimbo-Kumogo2 Institut National de Recherche Biomédicales , Kinshasa, Democratic Republic of Congo.
Caroline Foncelle1 UMI 233 TransVIHMI/INSERM1175, Institut de Recherche pour le Développement (IRD), University of Montpellier , Montpellier, France .
Octavie Lunguya-Metila2 Institut National de Recherche Biomédicales , Kinshasa, Democratic Republic of Congo.
Jean-Jacques Muyembe-Tamfum2 Institut National de Recherche Biomédicales , Kinshasa, Democratic Republic of Congo.
Eric Delaporte1 UMI 233 TransVIHMI/INSERM1175, Institut de Recherche pour le Développement (IRD), University of Montpellier , Montpellier, France .
Martine Peeters1 UMI 233 TransVIHMI/INSERM1175, Institut de Recherche pour le Développement (IRD), University of Montpellier , Montpellier, France .
Ahidjo Ayouba1 UMI 233 TransVIHMI/INSERM1175, Institut de Recherche pour le Développement (IRD), University of Montpellier , Montpellier, France .
National Institute of Biomedical Research · CDInstitut de Recherche pour le Développement · FRInserm · FRUniversité de Montpellier · FR

Funding

Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
NIAID NIH HHS R01 AI050529NIAID NIH HHS R37 AI050529
6 · The paper itself

Abstract

Our knowledge on simian immune deficiency virus (SIV) diversity and evolution in the different nonhuman primate species is still incomplete. In this study, we report the full genome characterization of a new SIV from a red-tailed monkey (2013DRC-I8), from the Cercopithecus ascanius whitesidei subspecies, in the Democratic Republic of Congo (DRC). The new full-length genome is 9,926 bp long, and the genomic structure is similar to that of other SIVs with the absence of vpx and vpu genes. The new SIVasc-13DRC-I8 strain fell within the Cercopithecus specific SIV lineage. SIVasc-13DRC-I8 and previously reported SIVrtg from the C.a. schmidti subspecies in Uganda did not form a separate species-specific SIV lineage. These observations provide additional evidence for high genetic diversity and the complex evolution of SIVs in the Cercopithecus genus. More studies on a large number of monkeys from a wider geographic area are needed to understand SIV evolution.

Indexed as

GenotypeAnimalsCercopithecusComputational BiologyDemocratic Republic of the CongoPhylogenySimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusWhole Genome SequencingCercopithecus ascaniusDemocratic Republic of CongoHIVred-tailed monkeySIV

Identifiers

PMID28383997
PMCPMC5512325
OpenAlexW2606918041

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.