Evidence map›Paper›PMID 28382515›Full record

ArticleImmunogenetics2017

Evolutionary and polymorphism analyses reveal the central role of BTN3A2 in the concerted evolution of the BTN3 gene family.

Hassnae Afrache, Pierre Pontarotti, Laurent Abi-Rached, Daniel Olive

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  9. Alpaca (Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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  12. Review
  13. The Armadillo (Frontiers in immunology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Hassnae AfracheCentre de Recherche en Cancérologie de Marseille (CRCM), Inserm, U1068, F-13009, Marseille, France.
Pierre PontarottiInstitut de Mathématiques de Marseille, UMR 7373, Marseille, France.
Laurent Abi-RachedATIP CNRS, Institut de Mathématiques de Marseille, UMR 7373, Marseille, France.
Daniel OliveCentre de Recherche en Cancérologie de Marseille (CRCM), Inserm, U1068, F-13009, Marseille, France. daniel.olive@inserm.fr.
Institut de Mathématiques de Marseille · FRCentre de Recherche en Cancérologie de Marseille · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The butyrophilin 3 (BTN3) receptors are implicated in the T lymphocytes regulation and present a wide plasticity in mammals. In order to understand how these genes have been diversified, we studied their evolution and show that the three human BTN3 are the result of two successive duplications in Primates and that the three genes are present in Hominoids and the Old World Monkey groups. A thorough phylogenetic analysis reveals a concerted evolution of BTN3 characterized by a strong and recurrent homogenization of the region encoding the signal peptide and the immunoglobulin variable (IgV) domain in Hominoids, where the sequences of BTN3A1 or BTN3A3 are replaced by BTN3A2 sequence. In human, the analysis of the diversity of these genes in 1683 individuals representing 26 worldwide populations shows that the three genes are polymorphic, with more than 46 alleles for each gene, and marked by extreme homogenization of the IgV sequences. The same analysis performed for the BTN2 genes shows also a concerted evolution; however, it is not as strong and recurrent as for BTN3. This study shows that BTN3 receptors are marked by extreme concerted evolution at the IgV domain and that BTN3A2 plays a central role in this evolution.

Indexed as

Evolution, MolecularMultigene FamilyPolymorphism, GeneticAllelesAmino Acid SequenceAnimalsButyrophilinsCodonFemaleGenomicsGenotypeHumansPhylogenyPrimatesProtein DomainsRecombination, GeneticButyrophilinsCodonButyrophilinConcerted evolutionHominoidsHomogenizationIgVPhylogenetic analysis

Identifiers

PMID28382515
OpenAlexW2604266680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.