Evidence map›Paper›PMID 28382042›Full record

ArticleFrontiers in plant science2017

Proteogenomic Analysis Greatly Expands the Identification of Proteins Related to Reproduction in the Apogamous Fern

Jonas Grossmann, Helena Fernández, Pururawa M Chaubey, Ana E Valdés, Valeria Gagliardini, María J Cañal, Giancarlo Russo, Ueli Grossniklaus

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Shared Proteome of the Apomictic FernInternational journal of molecular sciences · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. A Plant Biologist's Toolbox to Study Translation.Frontiers in plant science · 2018
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jonas GrossmannFunctional Genomics Center Zurich Zürich, Switzerland.
Helena FernándezArea of Plant Physiology, Department of Organisms and Systems Biology (BOS), Oviedo University Oviedo, Spain.
Pururawa M ChaubeyInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich Zürich, Switzerland.
Ana E ValdésPhysiological Botany, Uppsala BioCenter, Uppsala UniversityUppsala, Sweden; Linnean Centre for Plant BiologyUppsala, Sweden.
Valeria GagliardiniInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich Zürich, Switzerland.
María J CañalArea of Plant Physiology, Department of Organisms and Systems Biology (BOS), Oviedo University Oviedo, Spain.
Giancarlo RussoFunctional Genomics Center Zurich Zürich, Switzerland.
Ueli GrossniklausInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich Zürich, Switzerland.
University of Zurich · CHUniversidad de Oviedo · ESUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Performing proteomic studies on non-model organisms with little or no genomic information is still difficult. However, many specific processes and biochemical pathways occur only in species that are poorly characterized at the genomic level. For example, many plants can reproduce both sexually and asexually, the first one allowing the generation of new genotypes and the latter their fixation. Thus, both modes of reproduction are of great agronomic value. However, the molecular basis of asexual reproduction is not well understood in any plant. In ferns, it combines the production of unreduced spores (diplospory) and the formation of sporophytes from somatic cells (apogamy). To set the basis to study these processes, we performed transcriptomics by next-generation sequencing (NGS) and shotgun proteomics by tandem mass spectrometry in the apogamous fern

Indexed as

apogamyapomixisDryopteris affinis ssp. affinisferngametophyteproteogenomics

Identifiers

PMID28382042
PMCPMC5360702
OpenAlexW2603621713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.