Evidence map›Paper›PMID 28381877›Full record

ArticleJournal of human genetics2017

The genomic dynamics during progression of lung adenocarcinomas.

Bin Yang, Longhai Luo, Wen Luo, Yong Zhou, Chao Yang, Teng Xiong, Xiangchun Li, Xuan Meng, Lin Li, Xiaopin Zhang and 2 more

Abstract read
In one paragraph

Article in Journal of human genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Bin YangDepartment of Breast surgery, China-Japan Union Hospital of Jilin University, Changchun, China.
Longhai LuoBGI-Shenzhen, Shenzhen, China.
Wen LuoBGI-Shenzhen, Shenzhen, China.
Yong ZhouBGI-Shenzhen, Shenzhen, China.
Chao YangBGI-Shenzhen, Shenzhen, China.
Teng XiongBGI-Shenzhen, Shenzhen, China.
Xiangchun LiBGI-Shenzhen, Shenzhen, China.
Xuan MengBGI-Shenzhen, Shenzhen, China.
Lin LiBGI-Shenzhen, Shenzhen, China.
Xiaopin ZhangBGI-Shenzhen, Shenzhen, China.
Zhe WangBGI-Shenzhen, Shenzhen, China.
Zhixin WangDepartment of Urology, China-Japan Union Hospital of Jilin University, Changchun, China.
BGI Group (China) · CNJilin University · CNUnion Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intra-tumor heterogeneity is a big barrier to precision medicine. To explore the underlying clonal diversity in lung adenocarcinomas, we selected nine individuals with whole-genome sequencing data from primary and matched metastatic tumors as a cohort for study. Similar global pattern of arm-level copy number changes and large variations of somatic single-nucleotide variant between the primary and metastasis are observed in the majority of cases. Importantly, we found breakage-fusion-bridge (BFB) cycles acting as an important mechanism for underlying cancer gene amplification, such as amplification of CDK4, CDKN3 and FGFR1 in early stage. We also identified recurrent focal amplification of gene CCNY derived from BFB in two metastatic tumors, but not in primary tumor. Clonal analysis of case 236T demonstrated that mutational processes are varying with tumor progression. Collectively, our data provide new insights into genetic diversity and potential therapeutic target in lung adenocarcinoma.

Indexed as

Gene AmplificationMutationAdenocarcinomaBiomarkers, TumorDisease ProgressionDNA Copy Number VariationsGenome, HumanGenomicsHumansLung NeoplasmsBiomarkers, Tumor

Identifiers

PMID28381877
PMCPMC5537414
OpenAlexW2604720430

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.