Evidence map›Paper›PMID 28381554›Full record

ArticleThe Journal of biological chemistry2017

DNA mutagenic activity and capacity for HIV-1 restriction of the cytidine deaminase APOBEC3G depend on whether DNA or RNA binds to tyrosine 315.

Bogdan Polevoda, Rebecca Joseph, Alan E Friedman, Ryan P Bennett, Rebecca Greiner, Thareendra De Zoysa, Ryan A Stewart, Harold C Smith

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bogdan PolevodaFrom the Departments of Biochemistry and Biophysics and.
Rebecca JosephFrom the Departments of Biochemistry and Biophysics and.
Alan E FriedmanPediatrics.
Ryan P BennettOyaGen, Inc., Rochester, New York 14623.
Rebecca GreinerFrom the Departments of Biochemistry and Biophysics and.
Thareendra De ZoysaFrom the Departments of Biochemistry and Biophysics and.
Ryan A StewartOyaGen, Inc., Rochester, New York 14623.
Harold C SmithFrom the Departments of Biochemistry and Biophysics and harold.smith@rochester.edu.
Institute of Molecular Biology and Biophysics · RUOyaGen (United States) · USUniversity of Rochester Medical Center · US

Funding

Virology/Immunology CoreP30AI078498 · NIAID · UNIVERSITY OF ROCHESTER · PI DEWHURST, STEPHEN · 2008 to 2018
$14.6M
NIAID NIH HHS P30 AI078498
6 · The paper itself

Abstract

APOBEC3G (A3G) belongs to the AID/APOBEC protein family of cytidine deaminases (CDA) that bind to nucleic acids. A3G mutates the HIV genome by deamination of dC to dU, leading to accumulation of virus-inactivating mutations. Binding to cellular RNAs inhibits A3G binding to substrate single-stranded (ss) DNA and CDA activity. Bulk RNA and substrate ssDNA bind to the same three A3G tryptic peptides (amino acids 181-194, 314-320, and 345-374) that form parts of a continuously exposed protein surface extending from the catalytic domain in the C terminus of A3G to its N terminus. We show here that the A3G tyrosines 181 and 315 directly cross-linked ssDNA. Binding experiments showed that a Y315A mutation alone significantly reduced A3G binding to both ssDNA and RNA, whereas Y181A and Y182A mutations only moderately affected A3G nucleic acid binding. Consistent with these findings, the Y315A mutant exhibited little to no deaminase activity in an

Indexed as

MutagenesisAmino Acid SubstitutionAPOBEC-3G DeaminaseCell LineDNA, Single-StrandedDNA, ViralHIV-1HIV InfectionsHumansMutation, MissenseProtein DomainsRNA, ViralTyrosineAPOBEC-3G DeaminaseAPOBEC3G protein, humanDNA, Single-StrandedDNA, ViralRNA, ViralTyrosineAPOBECcytidine deaminaseDNA binding proteinHIVhuman immunodeficiency virus (HIV)mass spectrometry (MS)protein cross-linkingRNARNA binding protein

Identifiers

PMID28381554
PMCPMC5448093
OpenAlexW2605238228

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.